Detail information of GLYMA_U021500_circ_g.2


General Information
CircRNA Name GLYMA_U021500_circ_g.2
ID in PlantcircBase gma_circ_007847
Alias gma-circRNA2855
Organism Glycine max
Position chrscaffold_21: 3476693-3480114  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method find_circ
Parent gene GLYMA_U021500
Parent gene annotation hypothetical protein
Parent gene strand +
Alternative splicing GLYMA_U021500_circ_g.1
Support reads NA
Tissues flower bud
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered KRG89062:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATGAAGATGTCCATTCTGCTGGGTGTGGTCCACATGAACTTGGGAATTCTTTTAAGTTATTT
CAATGCTCGTTTCTTTGGCAACTCTCTGGATATAAGgttgagaaaattgtgtttgttgtgtttt
tctctggggagcaagcaagaacaaagatcctgaaaatttgtgatgcatttggtgcaaattgtta
ccctgttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1026
Transcript exons: ,3476693-3476830,3477684-3477791,3477928-3478035,3478171
-3478319,3478563-3478716,3479128-3479288,3479908-3480114
GTTGAGAAAATTGTGTTTGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACAAAGATCCTGAAAA
TTTGTGATGCATTTGGTGCAAATTGTTACCCTGTTCCTGAAGATACAAATAAACAGAGGCAAAT
AACTTCAGAGGTTTCATCCCGTCTTGCTGACTTAGAGGCAACTTTGGATGCTGGGATTAGGCTT
CGGAATAAGGCTCTAGCTTCTGTAGGAGGCCATTTAACAAAATGGATGGACATGGTAAGAAGAG
AGAAGGCTGTGTACGATACACTGAACATGTTAAATTTTGATGTCACCAAAAAATGCCTTGTTGG
AGAGGGCTGGTGCCCTATATTTGCAAAAACACAGATTCAGGAGGCACTGGAACGTGCAACTTTT
GACAGCAGTTCTCAAGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACAT
ATTTTAGGACCAATAGTTTCACAAGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAG
ATATCAAGAAGCAAATCCTGCAGTTTATACAACTATTATATTCCCATTTCTTTTTGCGGTTATG
TTTGGCGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTGGTTCTTATAGCACGTCAAA
GCAAGCTCAGCACTCAGCGACTTGGAAGCTTTATGGAGATGCTCTTTGGTGGGCGTTATGTGCT
ACTTTTGATGTCACTATTTTCAATTTATTGTGGGTTAATCTACAATGAATTCTTCTCTGTTCCT
TATCACATATTCGGTGCATCTGCTTATAAATGCCAAGATAGTTCATGCAGGGATGCGCATACTA
TTGGCTTAGTAAAATACAGAGAACCATATCCATTTGGTGTGGATCCCAGTTGGCGGGGAAGTCG
TTCAGAGTTGCCTTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTGCTGGGTGTGGTCCAC
ATGAACTTGGGAATTCTTTTAAGTTATTTCAATGCTCGTTTCTTTGGCAACTCTCTGGATATAA
G

Genomic sequence GTTGAGAAAATTGTGTTTGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACAAAGATCCTGAAAA
TTTGTGATGCATTTGGTGCAAATTGTTACCCTGTTCCTGAAGATACAAATAAACAGAGGCAAAT
AACTTCAGAGGTATGCATGCTCTGATTTAGAAGATATTTTTTCCTCCTCTATTATGCATTCTCT
TCTACCATGACATAGGGGTCACAAGTACTCTAGTTTCTCTGGGTTTTTTTGCTGCTACAATTTC
TGTAGGGGGGGGAATTGTCTGAACTTCAATATATTTGTATTGTTGAGATCTCACATCAACTAGA
GATATATGACTAATGTGGTCCTTATAAGGTTTGGACATTCCTCACCTAATAAGCTGGTCTTGTG
GGGTTAAGTCCTAATTCCAAAGTCTAAGATTGTATCAAAGCCTATCCAAGAACTATTTTTGGGT
CACCCTTATTTGTCTATGCTATAGATGTTTATTCCTAGGCCTGGGGAAGTGTTGTTATTGGTCT
ACAAATAGTCAAGTACGCAAAGAGATAGAGAGAGGGTGCCAGAAGTAGAACATGGCAAGAGAGA
TGACTAATTGGAAAAAGAAAATAATCCTGAAAATAAAGTGGAGCTCCATATTTAAGAAAATACA
GCAGCTGAATAATGGCAGGCCACTGAAACTGCTCCAGTATCATGTTCAGATTATAAGGTTTAGG
TAGGGGGAAAAGTAAAAGAGAAAATGGAGATTGAATAATCTGAATTTGATTTGATGCGATACAA
AAATACAAAGCAGTAGCCCCTATTGATAATTTAATATGAATGCTGGACTCCTAAACTTAATCGA
TTAAGGAAACAAATCATGACATATAATGAAATATGAAAACCATTTCTAGAGATATTCTAAACAA
TTCTAAGATACAATAGTGATATCATAGATTATTTTTCTAGATATTCTAATAGAGATTGTATGAT
TTCTAATAGAGAATATAGTTTATGATTACAGGTTTCATCCCGTCTTGCTGACTTAGAGGCAACT
TTGGATGCTGGGATTAGGCTTCGGAATAAGGCTCTAGCTTCTGTAGGAGGCCATTTAACAAAAT
GGATGGACATGGTAAGAATTAGCTTCTGAATATATTCTTGTTCCTTGTGATGTAACTGCAAGGC
ATTCCTAATACTTGATCAGTGTTTGCAAGTGATGAATATTTTATTATGAACCAATAGCTCTCGT
TCTTATCATCTTGTCCTAGGTAAGAAGAGAGAAGGCTGTGTACGATACACTGAACATGTTAAAT
TTTGATGTCACCAAAAAATGCCTTGTTGGAGAGGGCTGGTGCCCTATATTTGCAAAAACACAGG
TATCTTTCCCCCTCACATTTGTTGGATCCTCACTAATTTCCCCCCCTTTTTTTCCCTTTAATTT
TTGAGGAGTTCAAAACATCTTTGATGATTTCTATTGTCCATTAAAGAGATTGCATCTTTTGATT
TTCCAGATTCAGGAGGCACTGGAACGTGCAACTTTTGACAGCAGTTCTCAAGTTGGCATAATCT
TTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTAGGACCAATAGTTTCACAAGTCC
ATATCAGGAAATTGTTGATGCATATGGGTGAGCCTATATACAATATATTTATTAGCGACAACAC
GAGTATGTTAATGTATTGAAATAAATTATTTTCTTTGAAGTTAGAAGTGCATGGTGATGTGCTA
TGTCCATGTCAATAGATCAATAGATGTCTTTTTAATGTACATAGAGTTGAATAATGCCAGTTTA
GGATGGAACCATTATTTTGCAATTTTGCTATAAAAACTGAAAAGACTCCTAGTCCTAATGAGCC
CTTGTACTTGGCAGTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTATACAACTATTATAT
TCCCATTTCTTTTTGCGGTTATGTTTGGCGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGC
ATTGGTTCTTATAGCACGTCAAAGCAAGCTCAGCACTCAGGTAATGCTTTTCTAACTTTGACAT
AAATAAAGTAGCAATGGGAGTATTATACCAAAATATCATAATGGGTGTCATCATTATGGTTTGT
TAATCTTTGCGAAAAAACTTATTTATGATATATCAAATTTGATCAAAATTCTTTTCCATTTGAT
TGTAGTAGGATCATTGTATTAATGTTCAGAGTTGAGTATCCTGTGTTTTCTATGATTTAGTTGA
TAAACACCACAATGATTAAGTGACATTTTTTTATAATTATTATGATTTTATGTCCTTAAATATC
TTGAAATGTATTATGGTAATAAATCTATTGTACTGCATATAAGTGCAAATGAGTTGCACAGTAT
CCTTTATTTTTGTTCTGTTCCTGGCATTGGAATTAAGTACCTAACAACTATATTTGATTTCTGT
CAGCGACTTGGAAGCTTTATGGAGATGCTCTTTGGTGGGCGTTATGTGCTACTTTTGATGTCAC
TATTTTCAATTTATTGTGGGTTAATCTACAATGAATTCTTCTCTGTTCCTTATCACATATTCGG
TGCATCTGCTTATAAATGCCAAGATAGTTCATGCAGGTGTCTTTTATTTCTCTCTCTCTCTCTT
GTGCCAGTTTTATTTCTTTTTTTTTTTTTTTGTACCATTATGTAGATACACAAGGCATTAGTTG
TTGGTGTTTTAGGTTGCCCTTTCTATTTTATCTGTTTTTTAATTGAAACATAGGATCAACCATT
CAACTCCTGGTAATGACTCCTTGATTACCGAATTCTATTTTTGCTAAAATACAAATGTTGATTC
AAATCATTCTGCTATGCAGCAGTCATATCACCAATTCCATCCTCAGAAGAATCTTTTGGTTTGA
CACCATCAGATGTGTTTGGTCACAGTTCTAAGAGAGTTGCCTTAATGTCTGATTGTCTGTATAT
TATGACTGTTACCTTGGAAAACTGAAGTTCTTAAATTGATTCACATTTCACTTAAAATATTACC
TTCAAATCTACATCATCAGAAATAATTTGATTTGCATCTCTTCCACAGTTTGCACACTTCAGTT
ATGCCTTCCGTTTTTGCTCCTTTCCTCCTTCAAAATTGTGCTAATTTTTGGTGTTATATTGTCA
GAGCTTGCATAAATTGGAAAGTTGTTTTTTAGCCAGGTTTTAACTTGGTGTGTGATTATTTTAT
CATTCTCCACCCCAGGGATGCGCATACTATTGGCTTAGTAAAATACAGAGAACCATATCCATTT
GGTGTGGATCCCAGTTGGCGGGGAAGTCGTTCAGAGTTGCCTTTTCTAAACTCTCTCAAGATGA
AGATGTCCATTCTGCTGGGTGTGGTCCACATGAACTTGGGAATTCTTTTAAGTTATTTCAATGC
TCGTTTCTTTGGCAACTCTCTGGATATAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.342869948
Functional Information
Coding potential Y
Potential coding position 3477784-3476750(+)
3479284-3476750(+)
3477692-3480070(-)
Potential amino acid sequence MDMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALERATFDSSSQVGIIFHSMDA
LESPPTYFRTNSFTSPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGAL
VLIARQSKLSTQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCQDSS
CRDAHTIGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVVHMNLGILLSYFNARFF
GNSLDIRLRKLCLLCFSLGSKQEQRS*(+)
MQGCAYYWLSKIQRTISIWCGSQLAGKSFRVAFSKLSQDEDVHSAGCGPHELGNSFKLFQCSFL
WQLSGYKVEKIVFVVFFSGEQARTKILKICDAFGANCYPVPEDTNKQRQITSEVSSRLADLEAT
LDAGIRLRNKALASVGGHLTKWMDMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQE
ALERATFDSSSQVGIIFHSMDALESPPTYFRTNSFTSPYQEIVDAYGVARYQEANPAVYTTIIF
PFLFAVMFGDWGHGICLLLGALVLIARQSKLSTQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIY
NEFFSVPYHIFGASAYKCQDSSCRDAHTIGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMS
ILLGVVHMNLGILLSYFNARFFGNSLDIRLRKLCLLCFSLGSKQEQRS*(+)
MKPLKLFASVYLYLQEQGNNLHQMHHKFSGSLFLLAPQRKTQQTQFSQPYIQRVAKETSIEIT*
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2018