Detail information of AT1G74420_circ_g.1


General Information
CircRNA Name AT1G74420_circ_g.1
ID in PlantcircBase ath_circ_010149
Alias Ath_circ_FC1001
Organism Arabidpsis thaliana
Position chr1: 27968639-27969114  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G74420
Parent gene annotation fucosyltransferase 3
Parent gene strand -
Alternative splicing NA
Support reads 10
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered AT1G74420.1:1
AT1G74420.3:1
AT1G74420.4:1
AT1G74420.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTAGACTCAGCATCCTATTCCCAAGATCACCATTGGAATTCAACCATATTACATATCTACAAC
CAGAAACTTCACCGTCAGACCGATCTCCCGACTTGAgtgaaaagcagtatctttttccgggaag
agcatttgaagttcctgcttgaatgacgagactgagaagagagatgggagaaagaaactatccg
cttttaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAAAAGCAGTATCTTTTTCCGGGAAGAGCATTTGAAGTTCCTGCTTGAATGACGAGACTGAG
AAGAGAGATGGGAGAAAGAAACTATCCGCTTTTAAGATCAACCAGGGGGTTTCCTCCAACAAAA
CTTGACTATCCTCACAAAAGAAAAGCTTTTGTTGGTCACTGGAATCACGAACTACATGTCGATA
TGCAACCATCGGGTTGCCAGAATTGCGTAGAAGAGACTGCTCGTTGAAGTGGCTGTTGAGCGGA
AACTCTGGGGGAAGAAACCAAGTAGTGTTTGGAAATGGCTCGCAGAAAAGATCAGCCATGTCAA
CTCCTAGTTCGACAAGTAAAAACCTATTTGTTAAGAGAGCATAAAGAAAAGCTGAAGCTAGACT
CAGCATCCTATTCCCAAGATCACCATTGGAATTCAACCATATTACATATCTACAACCAGAAACT
TCACCGTCAGACCGATCTCCCGACTTGA
Conservation Information
Conserved circRNAs NA
PMCS 0.164928292
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a