Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G15570_circ_g.6 |
ID in PlantcircBase | ath_circ_002761 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5363938-5364412 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder |
Parent gene | AT1G15570 |
Parent gene annotation |
CYCA2 |
Parent gene strand | + |
Alternative splicing | AT1G15570_circ_g.1 AT1G15570_circ_g.2 AT1G15570_circ_g.3 AT1G15570_circ_g.4 AT1G15570_circ_g.5 AT1G15570_circ_g.7 AT1G15570_circ_g.8 |
Support reads | 3 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G15570.1:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.220944385 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
5363965-5364409(+) |
Potential amino acid sequence |
MERIQKDVTQSMRGILVDWLVEVSEEYTLASDTLYLTVYLIDWFLHGNYVQRQQLQLLGITCML IASKYEEISAPRIEEFCFITDNTYTRDQLKRRPLPDFMERIQKDVTQSMRGILVDWLVEVSEEY TLASDTLYLTVYLIDWFLHGNYVQRQQLQLLGITCMLIASKYEEISAPRIEEFCFITDNTYTRD QLKRRPLPDFMERIQKDVTQSMRGILVDWLVEVSEEYTLASDTLYLTVYLIDWFLHGNYVQRQQ LQLLGITCMLIASKYEEISAPRIEEFCFITDNTYTRDQLKRRPLPDFMERIQKDVTQSMRGILV DWLVEVSEEYTLASDTLYLTVYLIDWFLHGNYVQRQQLQLLGITCMLIASKYEEISAPRIEEFC FITDNTYTRDQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |