Detail information of AT1G48090_circ_g.2


General Information
CircRNA Name AT1G48090_circ_g.2
ID in PlantcircBase ath_circ_006227
Alias 1:17732530-17735229
Organism Arabidpsis thaliana
Position chr1: 17732530-17735229  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G48090
Parent gene annotation calcium-dependent lipid-binding family protein
Parent gene strand -
Alternative splicing AT1G48090_circ_g.1 AT1G48090_circ_g.3 AT1G48090_circ_g.4 AT1G48090_circ_g.5 AT1G48090_circ_g.6 AT1G48090_circ_g.7 AT1G48090_circ_g.8
Support reads 3
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G48090.6:8
AT1G48090.1:8
AT1G48090.4:8
AT1G48090.2:8
AT1G48090.3:8
AT1G48090.5:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCAGCTTTATCTCCGGTTCGCTGTGGTCTGAACAGAACTGGCATTGGAGCCAATGGCAATTGG
TTATCAACTTGTATTCCTTGCATCCTTAGTTTGAACcggggaggcgagaggggacattggaagg
aatgagagctcaaagattcagactttaacttgagctggtcgtagggctagtgccaaaggttgaa
gatggtgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1667
Transcript exons: 17732530-17732722,17732869-17733156,17733266-17733424,17
733605-17733961,17734189-17734410,17734600-17734726,1773
4823-17734965,17735052-17735229
CGGGGAGGCGAGAGGGGACATTGGAAGGAATGAGAGCTCAAAGATTCAGACTTTAACTTGAGCT
GGTCGTAGGGCTAGTGCCAAAGGTTGAAGATGGTGTAACTGAAGCTGGCATTTGTTGAGAAGCT
CCTTCAGCCCAAGAACTCTCAGAAATTGGGGAATATGGTCTTGTCACTTTGTTTTTCACCATTC
CCTTTAAAGCATTCTGCCCATACAAGTTAATGGCTTGATCGATAGCTGAGTAAACATCAAAGGC
CTGCTTGCTGTTGGGAATGCATTTGACAACACGGAATTGTTCCTTCGGGTCATGTGGCTTTGCT
TTCAGATAGAGAATAAGCCGCGAAGGTGGAGAGTTAGGTGGGTCTTTTTTCCCGTCACTCAGTT
CCATGGTTACCAGATCATTCCATAGAATATCCCACTGTATAGAACACGCATCTTTTGCCGGAAT
AAACTTTCTTTGGCCCATTATGTTGGAGGGTTGTTGTAGCAATATCACTCTTCGATGTGTGATC
ATCAGAACTTTTCCTTTTGGTAGGATGAAATGACTTTCGTAGGCATCTGTTAATGCAAACTTCC
CACGTACTTTAAACAGATCAACCTGGCCCAGGAATGATCCAGATTCTGCCAACTGCAATATGAC
CTGCCCCTGTGCCCTGTAATCATTGTAAGGACGAAGCAAGCTATCAGCACCAACCGCTCTTGGA
AGTCTCCGGCGAAGAAGTTGTTCATCTGAGGTGATGGCAGCTGCTATTTTCATCCTCATGGCAT
TTGCACCTTCAGTGGTCTTTGACAGAAGATCCAGAACTCCGCTCACAGGCTGGGCAGCAGCACC
AATGATTCCTTTCCCAAACCCAGAGACAAAGCCTTCGACACCAGAAGACTTTGCACCTTCGAGA
GGCTTTGTCAATATGCCTGTGACTCCTCTAAACAGGCCTTTCGCTAGAGCTCCACCTCCTTCTC
TGATAATATCGCCAAAGTCCTCAACACCTTTGTTTTCCTGTCTCTGTCGACTTTGGATGAATTT
TTTATCCATTGATAATGCAGCTATGCCTTGACTCATATGTCCAAGCGCGCTGCTTGCATTGCCA
AGAATATCAACACCTGAGAGCAACTGAAGAGGCTGGCCAAGGAGGTCTTTCTTTACGTTCCTAA
TAGCATTATTGATCATAGTACTTTGGCGCATGGATATGTTCTCATGAAATCTCTCACTTATGCG
TACTGGCATGTTTTCTGTATTCCCAAGAGCAGTCATCAGGGATGACCAAAATCCAAGCACTCCC
CTCGGCCTTTGACTGGGGGACATCGCCATGGATACTCTAAATCTAACTTCCGAGAAGTTAAGAA
CTCCGATTTGAATGAATGGATCAACTGATACAGCCGTCGAGTTAGGATCGGATAGTCTACTCAA
GTTGGCTTGCTGGATCATCTCATGAATGCGCCAGATAATAGGTTCATGGATGTTTATCAGAAAG
GCAGTATTTTCACGTCCTTGGAAATCTATATACGGGTAGACACGGAGATCAAGGCCAGCATTTG
ATTGCAAAGTAACAGAAAACTTCAAAATATAATCAGCTTTATCTCCGGTTCGCTGTGGTCTGAA
CAGAACTGGCATTGGAGCCAATGGCAATTGGTTATCAACTTGTATTCCTTGCATCCTTAGTTTG
AAC

Genomic sequence CGGGGAGGCGAGAGGGGACATTGGAAGGAATGAGAGCTCAAAGATTCAGACTTTAACTTGAGCT
GGTCGTAGGGCTAGTGCCAAAGGTTGAAGATGGTGTAACTGAAGCTGGCATTTGTTGAGAAGCT
CCTTCAGCCCAAGAACTCTCAGAAATTGGGGAATATGGTCTTGTCACTTTGTTTTTCACCATTC
CCTAAAACGAGTACGATAATTAAATCATCATATTAATTTGGCATATAGTTTCCACCACTGTAAT
ATCACTTATAACAACATGTTAGGGCCAATTGTTAAAAGGGGTGTCACTATGTAATTAAAAGTGA
AATAAAGATCTCTTCTCACCTTTAAAGCATTCTGCCCATACAAGTTAATGGCTTGATCGATAGC
TGAGTAAACATCAAAGGCCTGCTTGCTGTTGGGAATGCATTTGACAACACGGAATTGTTCCTTC
GGGTCATGTGGCTTTGCTTTCAGATAGAGAATAAGCCGCGAAGGTGGAGAGTTAGGTGGGTCTT
TTTTCCCGTCACTCAGTTCCATGGTTACCAGATCATTCCATAGAATATCCCACTGTATAGAACA
CGCATCTTTTGCCGGAATAAACTTTCTTTGGCCCATTATGTTGGAGGGTTGCTGGAAACATTAA
AAGTTTGGAAATTTCAATAGAATTTCTTGGATAGATACAGAAGACGAACACTATACCAATTAAA
CATAGAGAGCAAAAAGGTTTTGTCTAACTCACTTGTAGCAATATCACTCTTCGATGTGTGATCA
TCAGAACTTTTCCTTTTGGTAGGATGAAATGACTTTCGTAGGCATCTGTTAATGCAAACTTCCC
ACGTACTTTAAACAGATCAACCTGGCCCAGGAATGATCCAGATTCTGCCAACTGCAATATGACC
TGCAAATGCAAAATATTGGAGGTTTGAAATTTGTATAAGAATAATCATATGCTACGTAAACCAA
ACCAAATATATTATAAGCACCAGTAAATCCATTCCTCATCAGCTAACCAAGAGCAAAACGACTA
GTGCAAGCCACGAAATACAAATTTGAACATATTTACGGGTAAAAATTGTACCTGCCCCTGTGCC
CTGTAATCATTGTAAGGACGAAGCAAGCTATCAGCACCAACCGCTCTTGGAAGTCTCCGGCGAA
GAAGTTGTTCATCTGAGGTGATGGCAGCTGCTATTTTCATCCTCATGGCATTTGCACCTTCAGT
GGTCTTTGACAGAAGATCCAGAACTCCGCTCACAGGCTGGGCAGCAGCACCAATGATTCCTTTC
CCAAACCCAGAGACAAAGCCTTCGACACCAGAAGACTTTGCACCTTCGAGAGGCTTTGTCAATA
TGCCTGTGACTCCTCTAAACAGGCCTTTCGCTAGAGCTCCACCTCCTTCTCTGATAATATCGCC
AAAGTCCTCAACACCTTTGTTTTCCTGCCAAATCAAGAAACGCATTAGCGTGTACTAACAAAAT
GGAGCACAGGAAAGAAACACTGGCAAGCCCATACATCCGTTTAGTATCAGAAGCCATTCAAAAA
TTCAAGTGTTAAGAGGAAAATTTTCTACATATTAGGCTAATGGAAGGCAACTTGGATTGTTTAT
GTTGTATCCACAGGAAACAGCAACATGTACAAGGAGAAAAAACAAAGTCAGGAAGAAACCTGTC
TCTGTCGACTTTGGATGAATTTTTTATCCATTGATAATGCAGCTATGCCTTGACTCATATGTCC
AAGCGCGCTGCTTGCATTGCCAAGAATATCAACACCTGAGAGCAACTGAAGAGGCTGGCCAAGG
AGGTCTTTCTTTACGTTCCTAATAGCATTATTGATCATAGTACTTTGGCGCATGGATATGTTCT
CATGAAATCTCTCACTTATGCGTACCTATTTGAAGATAAGAAAAATTAGAAGAAGAAAAAAAAT
ACATACTGGGTTGGACTGAAAGTGTAGCAAGTAGTACATTGACAAAACAAATTCTAAAAACTAC
AAAACTTGTCGACTATAATTGATGTCCTACGAGTACCAAGTAGAAACCAATGGACATAAACCAA
TGAATTACTCTGGAATACTTACTGGCATGTTTTCTGTATTCCCAAGAGCAGTCATCAGGGATGA
CCAAAATCCAAGCACTCCCCTCGGCCTTTGACTGGGGGACATCGCCATGGATACTCTAAATCTA
ACTTCCGAGAAGTTAAGAACTCTGCATTTTTGGACGGGTGTAACCAAGATTAAGTCTTTTGAAT
GGAAGATTCATTCAGTAAACAGCATATATAGACCAAGAAAATCCCGTACATACCCGATTTGAAT
GAATGGATCAACTGATACAGCCGTCGAGTTAGGATCGGATAGTCTACTCAAGTTGGCTTGCTGG
ATCATCTCATGAATGCGCCAGATAATAGGTTCATGGATGTTTATCAGAAAGGCAGTATTTTCAC
GTCCCTAGTAAAGAGATATAACAATGTGAGCAAAATTTTAAATGCCAAAAATAATTGTTCAGGT
CGAAAACAGAAACTGTATAAACTTACTTGGAAATCTATATACGGGTAGACACGGAGATCAAGGC
CAGCATTTGATTGCAAAGTAACAGAAAACTTCAAAATATAATCAGCTTTATCTCCGGTTCGCTG
TGGTCTGAACAGAACTGGCATTGGAGCCAATGGCAATTGGTTATCAACTTGTATTCCTTGCATC
CTTAGTTTGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.19780381
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020