Detail information of Os05g0562300_circ_g.1


General Information
CircRNA Name Os05g0562300_circ_g.1
ID in PlantcircBase osa_circ_042180
Alias NA
Organism Oryza sativa
Position chr5: 27974128-27974165  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0562350
Parent gene annotation Hypothetical gene. (Os05t0562350-00)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0562300-01:1
Os05t0562300-01:1
Os05t0562350-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGCGGGTCGCTCAGCACtggtcgtacaccgctcgct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 38
Transcript exons: 27974128-27974165
TGGTCGTACACCGCTCGCTTCTGCGGGTCGCTCAGCAC

Genomic sequence TGGTCGTACACCGCTCGCTTCTGCGGGTCGCTCAGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.221494298
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study