Detail information of AT1G61100_circ_g.4


General Information
CircRNA Name AT1G61100_circ_g.4
ID in PlantcircBase ath_circ_008258
Alias 1:22511307-22511965
Organism Arabidpsis thaliana
Position chr1: 22511307-22511965  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G61100
Parent gene annotation CSL1
Parent gene strand -
Alternative splicing AT1G61100_circ_g.5
Support reads 1/1
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G61100.1:3
AT1G61100.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCTGATCTCTAGCGAACTTAAGATGAGAGACGAATGGTTCAAAAATCCCTGAAGCTAGCTTC
TCCTTCTTACTCCCACAGAATAGAACCAGATCGAATcttagaggactcattcgacttctttaga
ttactgctatctccagaattactccctgcaaatgataagcaaaacaggattaagataatgtcaa
gaacgctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGAGGACTCATTCGACTTCTTTAGATTACTGCTATCTCCAGAATTACTCCCTGCAAATGAT
AAGCAAAACAGGATTAAGATAATGTCAAGAACGCTGTTTAAACCAACACAATTGCCATTACAAG
CTAGCTTTTTAGCTTACCGTCTTGTAATTGCAGAGCATCAGCAGCATTGGCAATTTCATTAGCT
TGAATAGAATTCTCAATCTGCAAAATCTCTTTCTCCAGAGTCGCAAATCTTTCGATAATCGCAG
GCGTGTTTACAAATCTCACAAACCTACAATTAAAGAAACTTAATCAATAACAAGTCAACATTGT
CTCTACACAGTAACAAAAATCTTCCACACACCATTTATCATCACAAAGTCATTATCACAAACTT
GACATAAACACCAGATTTCTACTCGAATTAGCATAATTCGAATCTGAATTTGGAAATTGTCAAC
AAAATCGAAGCCGGATTATCAAAATTGAAATTACCGATCAAAAGTGGATTTGGTGAACCAAGAA
GAGTGAGAAGAAGGAGGAGTCAGAGAAATGGAGTAACCGCCTTTAGAGATCTGATCTCTAGCGA
ACTTAAGATGAGAGACGAATGGTTCAAAAATCCCTGAAGCTAGCTTCTCCTTCTTACTCCCACA
GAATAGAACCAGATCGAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.129109282
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020