Plant Circular RNA Database

Detail information of Os07g0596600_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os07g0596600_circ_g.4
					
						ID in PlantcircBase
						osa_circ_034632
					
						Alias
						Os_ciR11069
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 24294007-24296096  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os07g0596600						
					
						Parent gene annotation
						
							Similar to IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1); ATP bind
ing / kinase/ protein kinase/ protein serine/threonine kinase/ p
rotein tyrosine kinase. (Os07t0596600-01);Similar to Cdc2MsC pro
tein. (Os07t0596600-02);Similar to predicted protein. (Os07t0596
600-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0596600_circ_g.2 Os07g0596600_circ_g.3 Os07g0596600_circ_g.5 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0596600-02:5
Os07t0596600-03:5
Os07t0596600-01:5

General Information
CircRNA Name	Os07g0596600_circ_g.4
ID in PlantcircBase	osa_circ_034632
Alias	Os_ciR11069
Organism	Oryza sativa
Position	chr7: 24294007-24296096 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os07g0596600
Parent gene annotation	Similar to IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1); ATP bind ing / kinase/ protein kinase/ protein serine/threonine kinase/ p rotein tyrosine kinase. (Os07t0596600-01);Similar to Cdc2MsC pro tein. (Os07t0596600-02);Similar to predicted protein. (Os07t0596 600-03)
Parent gene strand	-
Alternative splicing	Os07g0596600_circ_g.2 Os07g0596600_circ_g.3 Os07g0596600_circ_g.5
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0596600-02:5 Os07t0596600-03:5 Os07t0596600-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATGTGGTTTGAATATTGTCGCATGAGGCAACTTTGACTTCTTCCAGTACTCATCAGCAGGGGA
ACCACATAGCTTAAAAATCTTATGCAGTTGCTCCACctctactgaaccatgatttccgaactac
ttgccggatgtggcgctcatgtttctctaatagttcatcaaccttgtgtgactgagataacaaa
gggccaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1108
Transcript exons: 24294007-24294139,24294220-24294762,24294886-24294991,24
295210-24295307,24295869-24296096
CTCTACTGAACCATGATTTCCGAACTACTTGCCGGATGTGGCGCTCATGTTTCTCTAATAGTTC
ATCAACCTTGTGTGACTGAGATAACAAAGGGCCAGAATATTCAACCCTCTCTCCTTGATCATGA
TCACCCTTGATGCTGTTTTTTGACGAGAGGGTATCCCCAAGATACATTGCATTAGAAAAATTCT
GAGAGTGGTAAGTGTCGTAAGAATCAAAGGAATCTGGACGTCCTAACTGTGACCATTTCTTCAG
AACGGCACGCTTTGCTGCATCATGAGGCTCTCGAACTTTGGAGTTGGCACGTGCTATATGCATG
TCTCTGTTAGGTTGTTCCTTCAAGCCGAGGTTCTGGTTCTCTTTAGCTGGCATCTTATTGTCCT
GATCTAACTCAGCAGTAAATTGGCCCCTTGAACTAGATTTGGTCCGAGATCTAGCGAATGAACG
ATCTTCTGGTGGTTTTTTAGCCCAAGCAAAGCCACTAGATGATGAAACAATCAATGGTCCAGAG
AAAGGGATCTCTTCTCGTGAATCATTCTTAACATGGCGAGACCTTTCTTTGACTTGGGCCACTG
AAACTGGCTGTATGTCTGAAAATAACCTAGCATCACCATTTACCTTTGTACGATCCAATATTGA
GTTGTCCTTGGTTCCATTTGCTTTAGTTTTGGACTCCTCTTTGCCATCAGTTTGCTTATTAACT
GTAGTTGTTTCTCTTGCAGCTCTGCTGAGCCTTGATTTCCTTGATGCTTCTGGCCCATGACCTC
TGCTAGCCTTTCGTCTGTGTGAATCTTCTCGTAATTTTGCATCCATCTCCTTGTTGGGTGCATA
CTTCGGCAGGCTTGAGGGATCACATGCGTAAGGCTTTGTCTTGAAAAACTCAGATGTAAGAGCA
GCAGATGCAGTACCACGTTTGTAGGGCTCCACTGATAGAAGAGTTTCTAGTAATCTCAATGCAT
TTGCTGGCATTTCTTTAAAAACATCTTGAAGGGTACTTTGATAAGGACAATGTGGTTTGAATAT
TGTCGCATGAGGCAACTTTGACTTCTTCCAGTACTCATCAGCAGGGGAACCACATAGCTTAAAA
ATCTTATGCAGTTGCTCCAC
						
					

						Genomic sequence
						
							CTCTACTGAACCATGATTTCCGAACTACTTGCCGGATGTGGCGCTCATGTTTCTCTAATAGTTC
ATCAACCTTGTGTGACTGAGATAACAAAGGGCCAGAATATTCAACCCTCTCTCCTTGATCATGA
TCACCCTAAAGGTTTAAACAACACACTGTTTACAACTTTGCTAACACCAATGAAGCAGAAACTA
TCAAATATGTAAATGCTTCACCTTGATGCTGTTTTTTGACGAGAGGGTATCCCCAAGATACATT
GCATTAGAAAAATTCTGAGAGTGGTAAGTGTCGTAAGAATCAAAGGAATCTGGACGTCCTAACT
GTGACCATTTCTTCAGAACGGCACGCTTTGCTGCATCATGAGGCTCTCGAACTTTGGAGTTGGC
ACGTGCTATATGCATGTCTCTGTTAGGTTGTTCCTTCAAGCCGAGGTTCTGGTTCTCTTTAGCT
GGCATCTTATTGTCCTGATCTAACTCAGCAGTAAATTGGCCCCTTGAACTAGATTTGGTCCGAG
ATCTAGCGAATGAACGATCTTCTGGTGGTTTTTTAGCCCAAGCAAAGCCACTAGATGATGAAAC
AATCAATGGTCCAGAGAAAGGGATCTCTTCTCGTGAATCATTCTTAACATGGCGAGACCTTTCT
TTGACTTGGGCCACTGAAACTGGCTGTATGTCTGAAAATAACCTAGCATCACCATTTACCTTTG
TACGATCCAATATTGAGTTGTCCTTGGTTCCATTTGCTTTAGTTTTGGACTCCTGAACCAAGAA
AGGAAGCCAGAAGAGATTTAATGAATAATAATGGCAGCAATTAAAAATCTTCAACCAGACTGCC
AAGTTGGCGCATGCCCCTGGTTGGCTCATACAAGAAAAAAAATCTACCTCTTTGCCATCAGTTT
GCTTATTAACTGTAGTTGTTTCTCTTGCAGCTCTGCTGAGCCTTGATTTCCTTGATGCTTCTGG
CCCATGACCTCTGCTAGCCTTTCGTCTGGAACATAAAAGCAAAAAATAAGATTATTATGCAGTG
CACAAACAAGCAGTGAACTTCCGGCTATCATTTGTATTGATACCAACTTAATTATACACTGTTG
GGAGCTCCTCTCTACAAAACATTTTCAAGTTATGAAAATAATACTTGAACTAAGTGATTCTAAG
TTTCTAATTCCTTTCCATATTAAACAATGATTCCACATTTAACACACCCACCTGTGTGAATCTT
CTCGTAATTTTGCATCCATCTCCTTGTTGGGTGCATACTTCGGCAGGCTTGAGGGATCACATGC
GTAAGGCTTTGTCTTGAAAAACTGTTTCAGTACACAACAAGGTCATGCATTTTTTAGCAGTTTG
ATTCAATATGATCATTTAAACTTTCACAATACATACAAAAATGATTAATGACCATGTTTCATTA
CACATGTTATGTGTACTGTGTAGTAGTCAATTGGAAGTTTGAAAGAGTTACCATGAACATGCCA
GGCCTCTGCACCTGAGTTCTTTGCTAATTCTTAGTGGTGAGACAATGGACAACAGTACAACACA
TTGGTACTATATGTCAGGGACAAGAGCACTTACTATAGCCCACACTAAAATGAGAACTTATAGC
CAAACTAAATGCTAGTTATACTGACAATAACTTAGTAATGCTACAATAGCTTGAACATCTTCTC
TACACTTGCAATTTCATAGAAGTAGGGAGTGTAGAATAGTATTACATGGTGATGCATAGCAAAA
TAAACTGGCAGGATATAGTTTCAGCAATAAATTTACAACGAACCAACAATAGAAAGACTGACTT
CCAAATATATGACCTTTTTATCCTTAAATAATACAATACTTATATAGGATACCAGATGGTCCAA
TCTTACCTCAGATGTAAGAGCAGCAGATGCAGTACCACGTTTGTAGGGCTCCACTGATAGAAGA
GTTTCTAGTAATCTCAATGCATTTGCTGGCATTTCTTTAAAAACATCTTGAAGGGTACTTTGAT
AAGGACAATGTGGTTTGAATATTGTCGCATGAGGCAACTTTGACTTCTTCCAGTACTCATCAGC
AGGGGAACCACATAGCTTAAAAATCTTATGCAGTTGCTCCAC
						
					

			
		

Sequences
Splice junction sequence	AATGTGGTTTGAATATTGTCGCATGAGGCAACTTTGACTTCTTCCAGTACTCATCAGCAGGGGA ACCACATAGCTTAAAAATCTTATGCAGTTGCTCCACctctactgaaccatgatttccgaactac ttgccggatgtggcgctcatgtttctctaatagttcatcaaccttgtgtgactgagataacaaa gggccaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1108 Transcript exons: 24294007-24294139,24294220-24294762,24294886-24294991,24 295210-24295307,24295869-24296096 CTCTACTGAACCATGATTTCCGAACTACTTGCCGGATGTGGCGCTCATGTTTCTCTAATAGTTC ATCAACCTTGTGTGACTGAGATAACAAAGGGCCAGAATATTCAACCCTCTCTCCTTGATCATGA TCACCCTTGATGCTGTTTTTTGACGAGAGGGTATCCCCAAGATACATTGCATTAGAAAAATTCT GAGAGTGGTAAGTGTCGTAAGAATCAAAGGAATCTGGACGTCCTAACTGTGACCATTTCTTCAG AACGGCACGCTTTGCTGCATCATGAGGCTCTCGAACTTTGGAGTTGGCACGTGCTATATGCATG TCTCTGTTAGGTTGTTCCTTCAAGCCGAGGTTCTGGTTCTCTTTAGCTGGCATCTTATTGTCCT GATCTAACTCAGCAGTAAATTGGCCCCTTGAACTAGATTTGGTCCGAGATCTAGCGAATGAACG ATCTTCTGGTGGTTTTTTAGCCCAAGCAAAGCCACTAGATGATGAAACAATCAATGGTCCAGAG AAAGGGATCTCTTCTCGTGAATCATTCTTAACATGGCGAGACCTTTCTTTGACTTGGGCCACTG AAACTGGCTGTATGTCTGAAAATAACCTAGCATCACCATTTACCTTTGTACGATCCAATATTGA GTTGTCCTTGGTTCCATTTGCTTTAGTTTTGGACTCCTCTTTGCCATCAGTTTGCTTATTAACT GTAGTTGTTTCTCTTGCAGCTCTGCTGAGCCTTGATTTCCTTGATGCTTCTGGCCCATGACCTC TGCTAGCCTTTCGTCTGTGTGAATCTTCTCGTAATTTTGCATCCATCTCCTTGTTGGGTGCATA CTTCGGCAGGCTTGAGGGATCACATGCGTAAGGCTTTGTCTTGAAAAACTCAGATGTAAGAGCA GCAGATGCAGTACCACGTTTGTAGGGCTCCACTGATAGAAGAGTTTCTAGTAATCTCAATGCAT TTGCTGGCATTTCTTTAAAAACATCTTGAAGGGTACTTTGATAAGGACAATGTGGTTTGAATAT TGTCGCATGAGGCAACTTTGACTTCTTCCAGTACTCATCAGCAGGGGAACCACATAGCTTAAAA ATCTTATGCAGTTGCTCCAC
Genomic sequence	CTCTACTGAACCATGATTTCCGAACTACTTGCCGGATGTGGCGCTCATGTTTCTCTAATAGTTC ATCAACCTTGTGTGACTGAGATAACAAAGGGCCAGAATATTCAACCCTCTCTCCTTGATCATGA TCACCCTAAAGGTTTAAACAACACACTGTTTACAACTTTGCTAACACCAATGAAGCAGAAACTA TCAAATATGTAAATGCTTCACCTTGATGCTGTTTTTTGACGAGAGGGTATCCCCAAGATACATT GCATTAGAAAAATTCTGAGAGTGGTAAGTGTCGTAAGAATCAAAGGAATCTGGACGTCCTAACT GTGACCATTTCTTCAGAACGGCACGCTTTGCTGCATCATGAGGCTCTCGAACTTTGGAGTTGGC ACGTGCTATATGCATGTCTCTGTTAGGTTGTTCCTTCAAGCCGAGGTTCTGGTTCTCTTTAGCT GGCATCTTATTGTCCTGATCTAACTCAGCAGTAAATTGGCCCCTTGAACTAGATTTGGTCCGAG ATCTAGCGAATGAACGATCTTCTGGTGGTTTTTTAGCCCAAGCAAAGCCACTAGATGATGAAAC AATCAATGGTCCAGAGAAAGGGATCTCTTCTCGTGAATCATTCTTAACATGGCGAGACCTTTCT TTGACTTGGGCCACTGAAACTGGCTGTATGTCTGAAAATAACCTAGCATCACCATTTACCTTTG TACGATCCAATATTGAGTTGTCCTTGGTTCCATTTGCTTTAGTTTTGGACTCCTGAACCAAGAA AGGAAGCCAGAAGAGATTTAATGAATAATAATGGCAGCAATTAAAAATCTTCAACCAGACTGCC AAGTTGGCGCATGCCCCTGGTTGGCTCATACAAGAAAAAAAATCTACCTCTTTGCCATCAGTTT GCTTATTAACTGTAGTTGTTTCTCTTGCAGCTCTGCTGAGCCTTGATTTCCTTGATGCTTCTGG CCCATGACCTCTGCTAGCCTTTCGTCTGGAACATAAAAGCAAAAAATAAGATTATTATGCAGTG CACAAACAAGCAGTGAACTTCCGGCTATCATTTGTATTGATACCAACTTAATTATACACTGTTG GGAGCTCCTCTCTACAAAACATTTTCAAGTTATGAAAATAATACTTGAACTAAGTGATTCTAAG TTTCTAATTCCTTTCCATATTAAACAATGATTCCACATTTAACACACCCACCTGTGTGAATCTT CTCGTAATTTTGCATCCATCTCCTTGTTGGGTGCATACTTCGGCAGGCTTGAGGGATCACATGC GTAAGGCTTTGTCTTGAAAAACTGTTTCAGTACACAACAAGGTCATGCATTTTTTAGCAGTTTG ATTCAATATGATCATTTAAACTTTCACAATACATACAAAAATGATTAATGACCATGTTTCATTA CACATGTTATGTGTACTGTGTAGTAGTCAATTGGAAGTTTGAAAGAGTTACCATGAACATGCCA GGCCTCTGCACCTGAGTTCTTTGCTAATTCTTAGTGGTGAGACAATGGACAACAGTACAACACA TTGGTACTATATGTCAGGGACAAGAGCACTTACTATAGCCCACACTAAAATGAGAACTTATAGC CAAACTAAATGCTAGTTATACTGACAATAACTTAGTAATGCTACAATAGCTTGAACATCTTCTC TACACTTGCAATTTCATAGAAGTAGGGAGTGTAGAATAGTATTACATGGTGATGCATAGCAAAA TAAACTGGCAGGATATAGTTTCAGCAATAAATTTACAACGAACCAACAATAGAAAGACTGACTT CCAAATATATGACCTTTTTATCCTTAAATAATACAATACTTATATAGGATACCAGATGGTCCAA TCTTACCTCAGATGTAAGAGCAGCAGATGCAGTACCACGTTTGTAGGGCTCCACTGATAGAAGA GTTTCTAGTAATCTCAATGCATTTGCTGGCATTTCTTTAAAAACATCTTGAAGGGTACTTTGAT AAGGACAATGTGGTTTGAATATTGTCGCATGAGGCAACTTTGACTTCTTCCAGTACTCATCAGC AGGGGAACCACATAGCTTAAAAATCTTATGCAGTTGCTCCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.252819809

Conservation Information
Conserved circRNAs	NA
PMCS	0.252819809

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							24295960-24296082(-)
						
						Potential amino acid sequence
						
							MPANALRLLETLLSVEPYKRGTASAALTSEFFKTKPYACDPSSLPKYAPNKEMDAKLREDSHRR
KASRGHGPEASRKSRLSRAARETTTVNKQTDGKEESKTKANGTKDNSILDRTKVNGDARLFSDI
QPVSVAQVKERSRHVKNDSREEIPFSGPLIVSSSSGFAWAKKPPEDRSFARSRTKSSSRGQFTA
ELDQDNKMPAKENQNLGLKEQPNRDMHIARANSKVREPHDAAKRAVLKKWSQLGRPDSFDSYDT
YHSQNFSNAMYLGDTLSSKNSIKGDHDQGERVEYSGPLLSQSHKVDELLEKHERHIRQVVRKSW
FSRGGATA*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	24295960-24296082(-)
Potential amino acid sequence	MPANALRLLETLLSVEPYKRGTASAALTSEFFKTKPYACDPSSLPKYAPNKEMDAKLREDSHRR KASRGHGPEASRKSRLSRAARETTTVNKQTDGKEESKTKANGTKDNSILDRTKVNGDARLFSDI QPVSVAQVKERSRHVKNDSREEIPFSGPLIVSSSSGFAWAKKPPEDRSFARSRTKSSSRGQFTA ELDQDNKMPAKENQNLGLKEQPNRDMHIARANSKVREPHDAAKRAVLKKWSQLGRPDSFDSYDT YHSQNFSNAMYLGDTLSSKNSIKGDHDQGERVEYSGPLLSQSHKVDELLEKHERHIRQVVRKSW FSRGGATA*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os07g0596600_circ_g.4

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