Detail information of Solyc12g007180.1_circ_g.1


General Information
CircRNA Name Solyc12g007180.1_circ_g.1
ID in PlantcircBase sly_circ_003505
Alias NA
Organism Solanum lycopersicum
Position chr12: 1620849-1624951  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method Segemehl, CIRI
Parent gene Solyc12g007180.1
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc12g007180.1.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGAGAGTGTTTGCAGTTACACTGCTTTTGCTTTTTAGGAGTACCATCTTTTACTTCACTAGCA
CTTTGCCTCGGACGTGCTCTTGGAGATTCTGGTTTCctgccagcatcttcgctgcttctcctga
atatacaactaaaactgagcaaagttccttcaagtcctgcggttggatgaggtcttccagcaga
gaccttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCCAGCATCTTCGCTGCTTCTCCTGAATATACAACTAAAACTGAGCAAAGTTCCTTCAAGTC
CTGCGGTTGGATGAGGTCTTCCAGCAGAGACCTTCAACGATGACATGACGATTAGTTTGCTGAA
TGAGCAGTACAGGTTAATTTCTTAGGGGCAGTTACTGCTACCTGTAAGTAAACTTGGAAGGACC
CACTGTTGCAGCATTTCCAACACATGGACCAGGACTTGAAGATAATGAAGGTAGGACAGAAGAT
TTAATATGGTTCCCCTGTATTATACAGTACGCTATGTCATCAATCAATTATTTTCTAAAAAATT
CAAAGCAGAGTCAACTGCGAATTGTCACTCCAGCTTATTTTAAGCAAAAAAATCAATCGACGAG
AACAAGATCCTCTTTGAATAGACTTTTGGCTTCTTTTCACCATTTTATCTTAAAATAAGCACTT
CTAAAAAAATTCCACACACTAAAAATATGTCTGAAAGATATTTGGCTCAAAATCACTTAAAATA
AGCCAATCCAAACAAGCTCTAAATCCATAAAAAAAATCACGTAGTAATTAAATGCCTTTTCTCA
GATGAAACCATGCCCCTGTGCAATCAACTATTATCAGCAATGCAGTGTTGCCCGGTAGATAAAT
ATGAGAAGGAACAAAAACATTCTTCACTAATCATACAGTTGAAAATGCCTCAATTCAATGGTGG
AAAAATATTGTTTACCTGTTGGAGTTGTCCATGCCTGTGAATAGGGTCCTTAATTGTTGACCCA
AAGAACAGTTCCTGGCTCTTTCTTTTCTTATTCACTGGAGGAGATCCATAACCAGAAGATCCAA
TGGCACCTGTGATTGCAGCATTTGCCGCCTGTTGGAGATATGCCATATTGTTTGCATGATCTCC
ATGAAAAAGAGCCTGCCTCTCTTCACTTCCTTCAAAATTTTTGCAGTCCATGCATTTACAATTT
TCAGAGCAAAGAATATTGGCTTGAAAGCACTCACAGTACTTTTTGAGACAACCTGATTTCTTGC
AGTGACATCCTTTATTATGCTTTGCCAAGACTAAGCCATCCCCAGCTTCCTCCTAAAAAGATTT
AGGTGCATGAAGTTATCAAATAGATGAAGAAACAATAACTGGAGCTACTTTGATTTACTTCAAA
TTTCAACTTTGAACTTTGATGTGATGCTTTCTCTATCAAACAAAAATTGAAAAGTGCATTGTTA
TGATAATAATTTGCATAGAAGCACCTTCTCTTACTCCTACACGTAGTACACAGAAAATAGATAG
AGAAGGCAGAGATTGCAAGATTAAGTCAACATTTCACTATTCAAATGCAAGCTTGAGTAACCAC
ATGCATTTACATTGACAAGCTCAATTCAATCTCAAAGTCAAAGTAGAACATATTGACTTCTCAA
GCTCGAAACTTCAAGTAATTATTGATTATATTGCATTTCCTACTTTTTCAGACAGCAATTTTAA
CGAGGTTATTCCTAAAGAGAGATAGCAATAAAGCAATTGTATCTTAAGACCACAAGGACATCAG
AGAGTAGGACATCTATGAATCAACTTAATTTCAAAAAGTACCTTATTATCTCGAGCTCCATGTG
GACTGCTGGCAATTTTAGGCCTGAATGCATGTGGATTACGCTCTAAAGTAGCTTCTACTGCTTC
GCGCCTAGCAGGCTCATTTTCAACATTGTTATGACAATTGTTACAATTGCACCCATCACAGTAT
ACTCCAGATGCAAAGCATTCACAATACCTGACCCAAAACAACAGAAAGAAAGCAAAGAAAAAAG
CACATTGCATAAGATCTAACATTGCATTGTTCATTCACATACTATCAGCAAAACATCAGATAAA
GATTAACTTAAGAAAACAAATAATCACAGGGATAAAGTAATAAATTAGAAGAAACTTTACATAT
TGATAGAACACGAACATCTTACATATCTCTTAATCTTATAGTACAAAACATGACATCCCAACCC
ATTCTCTGTAGAAAGCGATTCTAATAGTATAGTAACGCATAGACGTGAAACAATTTTATATACA
TGAAAATTAACAGAAAATGGGATTATATATAAATATTACCAGCAAGTCCCACAAACTGACTTTT
TACATGGGTTGGTTTTCAACCAAGAAAACAAATGTGGTGGTTTATTTAGATTTGATATATAATA
TAACTTCAAAAACTCAAAAAAAACCTCCATTTTCGAAATACGGACTGAATACGTTGCATGGGCA
CTTTGAAACAAATAGCCCATTTATTCATGGCTAGAACATAATAGCCAAAAGGTCCAGTTTTGCA
AGGAGTGAATTTACTAAAAACTGTGGTTTTATCTGTGGCTTTAGCTGGTAAATTTTTCACGTAT
TTGTATTATGTATAAACTCAAACTTCCACGTAAAGCACAAAAACATAAATTTCAAACCCTAAAA
CTTATCTGTGTATACTGTATAGTTGTATAACCCTATACTTCGAACTCCTAATGTAATGTCATAT
AACCCAAAACCCAAAGTTTTAGTGTAATGTTTAACCTACACAACTAAACTATAATCTATACTAA
AACTGCCCAAACCATCCACCTAACAAGCACAACCTAATTTAAGTATTGAAAAGTGTGGTCTTTT
ACAACAAATGTGTGGTTTTGGTTTTTTATTTTTCCAAAACCTGCATTTGGTTATGGTTTTACTT
CAATAACCACCACAAAATCTCTACCATCCATGTAGACATCTAGTCACCATTGACTGTATATCTT
ATCCGGTTAGATAATTCCTTTTCCTAAAGTTTTACCACAATGTCCTTGTGCTCACAAGTTAATG
CAAAGACAGTCAGTACTATGACAGAAAGCGAAAATAATGGACATATGCTCCTGGAAATGAAAGT
TTGCCTACTTGAGCAGATTCAAAAAGGCCCAGAAAAGCATATGGAAGGTAAATATAAGTCATGG
ACTAGGCTTTAATCTCATTATTATCTTCCCTTTTGGAAAATTACCAATAAACCCTAAGATAAAA
TTAATAGCTTCTTTAGAACAGGGATTAAACATATGCATGTGTCATATTTCCCATTTATTAATCC
TTCCTGTTGGGAATTGTTTAGTTGACAATATTATGATGACTATTGTTTGGAAATGAAACAAGCA
AATTTCAATATACACTATCTTTCACAGAAGGGAAATATCTCTTATCTACAAAAAATGTGACAGA
TAAGAAAGAAACATGAGAAACAAGAACGATGAGGCAGAAAATTAGGATCCTCTATTGAATATTA
AATTTCTCTTCATGTGAGAGAAAACCAAGATTTTAGGACATCCCACAATTGGTTTTTAATCCTA
ACCAAACTCTAGTCACCTTGGACATGACCCCTCACTTTATATGACCATTCTCACAATCTTTCAA
ATCCCTATAAATACCAAAATATTTGGGGAATACACGGGCAGTATTGATGTCAAATTGTTTAGAC
AAAGATAAATCAACCCCAAAATTAGTCTTGTAAACCAGGCAACAGAATAATCATTAGCAAGTGC
CCTCAAATATATGCTTCCCAACAAACAAATAAATCTCTACATTGATGTCTTAGCACTTCTTTGG
TTGGATCACCTTGACAATAGTTTTTTCTATGGCAAATCATGATTATGATACTTGAACACCTTGA
TAATAGGTTATCTTCTTGAAATGATCAGGACTTGCTATTCTTCTTTCATTTCCTATTCCAACAT
TTAGAACAATAAATTGAGTTAATGATAAATCTATGCCTTTGTGCTCAAATTGAACCGTCCAGTA
CTCTGAAGAGTGTGGGTGTTAAATAATTATAGGGTTTTCTAATGGTCATTACCTCATGTATATT
CCTTCCAACAAATGTTTTGCCAGCAAAAAGCAGAAAAATGGAAATTTCAGAGGTTATCAGTGTC
ACCTTCATGTATTTGCCATTGATTTACAAATTTTAGTTATTTTTGAGATTTCGAGATAAGTTCT
GAATGAGAAAGAAGTAGTACTTACAACTTTAGACATCGAGAGTGTTTGCAGTTACACTGCTTTT
GCTTTTTAGGAGTACCATCTTTTACTTCACTAGCACTTTGCCTCGGACGTGCTCTTGGAGATTC
TGGTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.18900979
Functional Information
Coding potential Y
Potential coding position 1621067-1624904(-)
1621797-1624904(-)
Potential amino acid sequence MCWKCCNSGSFQVYLQVSAGRPHPTAGLEGTLLSFSCIFRRSSEDAGRKPESPRARPRQSASEV
KDGTPKKQKQCNCKHSRCLKLYCECFASGVYCDGCNCNNCHNNVENEPARREAVEATLERNPHA
FRPKIASSPHGARDNKEEAGDGLVLAKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKN
FEGSEERQALFHGDHANNMAYLQQAANAAITGAIGSSGYGSPPVNKKRKSQELFFGSTIKDPIH
RHGQLQQGNHIKSSVLPSLSSSPGPCVGNAATVGPSKFTYRSLLEDLIQPQDLKELCSVLVVYS
GEAAKMLAGNQNLQEHVRGKVLVK*(-)
MDCKNFEGSEERQALFHGDHANNMAYLQQAANAAITGAIGSSGYGSPPVNKKRKSQELFFGSTI
KDPIHRHGQLQQGNHIKSSVLPSLSSSPGPCVGNAATVGPSKFTYRSLLEDLIQPQDLKELCSV
LVVYSGEAAKMLAGNQNLQEHVRGKVLVK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017