Detail information of BGIOSGA020801_circ_g.6


General Information
CircRNA Name BGIOSGA020801_circ_g.6
ID in PlantcircBase osi_circ_016457
Alias Chr06:26764831_26766899(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 27412236-27414302  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA020801
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA020801_circ_g.3 BGIOSGA020801_circ_g.4 BGIOSGA020801_circ_g.5 BGIOSGA020801_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA020801-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGCACTAGCTTCAGGTGTCTGAGCGATCCAAGAAGGAATCATCACACAGTAACTCCATCCGGT
TTGAGGGTTATGTGGCCATATGGTGTTCCTTCCCTCcatgagcgtgcagcagcttccagctcaa
gaaaagcagcaacaggtgcacttctcgacaactcaatgtcagaaagtagcttttgcatccactc
ctccaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGAGCGTGCAGCAGCTTCCAGCTCAAGAAAAGCAGCAACAGGTGCACTTCTCGACAACTCAA
TGTCAGAAAGTAGCTTTTGCATCCACTCCTCCAAAGCGTTCCTTCTCTGCAAACAAAACATTTC
AAGAACCACCGGTCAAAAAGGCTAAGCACAACTGAATGTAGTATTTGACATCGAACAAAGCAAA
AATTAATCAATATACATAACGGCTAACCTCTTCTAGAAGCACCCTGCTTGAATTTATTCTTGAA
AAGGCATGCTTCGGTGGAGCAGGGGGGATTCCTTTTCTGGGAAATTCCTGCTTAAGCTGCAGTA
CGGGAGAATCTTAGAATGAAGAAATGATATTGGATTAGAGGTCGAATGGAAAGTAATAATCTTT
TTTTCTCAGAATCATATCCAAGATGAGACTTCCAAAATGTCCACATTCATTATAGAAACCATAA
AATTGCAAAAGGTGAAGTCCTCATTATGAAGTCACCAGCGGAAGATGCAAAAATCTGTAAAAAC
TAATTTGGCCCAGGTAAGCATACCGTATACACTAAGTCAAGATTTATAATAACAGTATGTTTTA
AAGTATCTGAAGTCTGACTACCTGTGTGATGCAATGCACCAAAAATCCTAAGTTGCAACGGAAG
TCACTGGAGAAGCAAGCAATTGTGCATTCAATGCACTAGCAAATGTAAGTCCAATTCAAAGGTT
TGATTACATTTTCAAATTTAATGCCAGATAAATTAATCTGGCAGACCACTCAGGATACGATAGG
GGATTATTCTTATTTAAAAATCACTGGAGGTTGTTCTTGAAAGGTATGTTCCAACTGAAAATGT
TAGTGGGCTTCTAGCTCAGGAAAGAAGGTCGGTACAATTTAAAGACACTTGGCATGTGAAAGAA
GAAAATAGCAAAGAGGTGTCTCACTTACATCAGAAGATAACTTTAGAAAGTCACTAAACCTTCG
AAGAACTCCGTGGCTAGAGCTGATGCCTTCTGGAGATTGTATACCAACATGTATCCTGTAAACT
GTCCTTTATGGGCATTAAAATGAGATCATAAACAGAACAGTATCAAAGTTCACAACAAACAGGA
ATTGCATGATATATGCAACAGAATTACATAAGTGTCTCTTGCCTGTCGATCACAACTAAACTAG
TGAGCCAAAAGAGAGGTAAGATGCACCACAGTTACCAAAACACCAAAAAGTATATTTCTGCCAG
TGGGTCACCCTGAATCATTAGCACAATACTTCCTATGGCATGTCATGTTGGCATACACCATTGT
GGCATGGGCTGCACGTGAGTTAATGACTTCAGCCATGGCTATTGTGATTTGCACTTGTCCCCCA
TGAGTTTTGGCCTTACATAGTTCTCTCTCACCCCCAACTCAAACCCCCTGTGTACTGAGACAAG
TGAGGCAGTTGTGCGGAGAGGGAGAATCACCTCTAGTGTACTGCACGTCAGCGATTGGTTATCA
CAACAAAATTTGCACCCCATACAGGGGTATGCCTCAACACGCCATGTTGTCATTAAGAGTCAGG
ACAGTGTGCTAACAACCAAAAGTGACCCTTTAGTGATCTAAAGAAAAGTACAGTTTTGTGAATC
CAGCAGCCTAATAAACTAGTTTGATAAGTATGGTGGAATATTGGAAAGTGACACGATTTACTCA
AAATGAAAGAACAATAAAAAGGTAATACATTAGAAAGTTGGCATCCACTACCCAATATGAGATA
GTTTTGAAAGAAGCTCAGTTCTTCGTTGATAAGTGCTGAACTTCTTTTGTCCTTTTTATTGGTC
TAACAAGGTTTTCTCACTTGTAATCCACTCCAAGCACATTTATGTTGTAGCATAGCGGTAATAC
CAGAGACACAACATTTCCAATCTGTACGTCAATCCAAATTGACTGACAAAAATAACGTGATGAT
AATATAAGCAGTACTCACAACTACGGATTTCAAGAAGTTGTCAGCAGTCGCACTAGCTTCAGGT
GTCTGAGCGATCCAAGAAGGAATCATCACACAGTAACTCCATCCGGTTTGAGGGTTATGTGGCC
ATATGGTGTTCCTTCCCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021