Detail information of Os12g0612850_circ_g.2


General Information
CircRNA Name Os12g0612850_circ_g.2
ID in PlantcircBase osa_circ_012281
Alias NA
Organism Oryza sativa
Position chr12: 25921455-25924218  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0612700
Parent gene annotation Class III homeodomain-leucine zipper (HD-Zip III) protein, Age-d
ependent leaf senescence (Os12t0612700-01)
Parent gene strand -
Alternative splicing Os12g0612850_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0612850-00:8
Os12t0612700-01:9
Os12t0612850-00:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATCAGATAACCACTGGGAAGTACCTCGGCTCTGATAAAATTCGGAGTGTTAGGCCCAGATGG
GCCACCAGTGGACTGAGTCAATGACCTTTCACAGATcttcagagaacagcacagtattgcgtcg
ctgtgcttccacaggagcgccaggggagaatcggcatcttcggtatcagaccaacggatatctg
ctccggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCAGAGAACAGCACAGTATTGCGTCGCTGTGCTTCCACAGGAGCGCCAGGGGAGAATCGGCA
TCTTCGGTATCAGACCAACGGATATCTGCTCCGGTGTGAGCCCTGAAAGATCCACGGAAATAAC
TAGTGCATTAACATCATTGATCACAACTTCAGATGTGGCAATGTGTAGGTGGTTCTGATGATGA
AGAACCTGAGATAGACTTTTGCTAAAAATAAGTATTTTACTTACCTATAGCTCCTACCAATCCA
GCTAGCAAGTGTAAGCGCCTCAGGAGAGGCTGGAGGGTGCTTCATTCCGATCTGGGGTCCAAGT
CGAGAAGGAGCTATTGCCACAGCCACCCTCTGCACGGATGCCATCACAGCTCTGACATAACTCC
TAGCCATTGCCGCCACGCTCTCACGAAGGTGGTTCTCGTATGAGAATTGGAAAGCAATGGTCAG
GACTGATCTGTTACATGTGCCAGATGCTTCAACTGAAGCACGCGAAGCTCCACCTGGTCCAACC
TCAAGGGCGGATGCAAGGTCGAGCGTGCGTGTTGCAGATGGCCCATCCTGCAGGTTTGAGTGCA
TAACGGTTAATTGGTGAGCCAACATGGGAAAGACAAGGCCTCTGGAATAAGATTATGGACCAGT
CATACCATTTTTGTATCTAGTGGTATCACACGGAATCCTGAGGGTAAAAGTGGTGCATCATCAG
CAAAAGATTCGTCAATAGGAGCAAAGACAAGCTGTGCAGATGCACTAGTAGCATTCTCATCAAC
CCCGCTGCAAAGCTGCATAGAAAGCAATCTCTCAGAACCAGGAAAATGCAACAAACAGGTACAA
CTTAAGGCAATTGTCATGAGCAAGGATTATGTGGAGAAGAATCGGGATGAATGGGGATAGATTG
GATTATAGTAGATGAAATAACAAGGAATACGGTCCTGAACCTAAACGGCGCGACGCTCTCCGTC
GCACTGAGAAGGCAGGCCGATGGGCACTAAGATAAATCTTGATCTAATGCCTAATTGACCTGAG
ATAGGATCCCTCCTTATATAGATGGAGGACTCCTTAATCTAATCCTAACAAACCTTATCTAATC
CTAACAAACCCTAATCCTATCCAATGGACCTAGGACGCCCGGCCCAAAGCCCATGACATTACTC
CCCCCTTTTTGAGCAGCTCGTCCTCGAGCTGCAGCACACCCTGCTAGACTTAACGAAGCACCAT
AACCTAAACTAAGACTCTTAAACCTTTTACATCTCAGCTTTTATTATGAACAAAAATAAAAAAT
AATTCATGCGCAGGAGGACCTGATCCACCAGAAACCCTGAGCAGAAGGTTAGGCCCATACGGTG
GCCAAGAACAGCAGCATGCCTCCCACCGAAGCCCACTTGTCCAGCCCAACAGCAAAGGAATAAA
TAGTTGACTCGGATGGTCCACAATACCTGTAGAAGGTACATATCCCGTGATAGAAGCACCTCAT
CATGGCTGAAACCATGTCCTTCGAGCCTAATAACCTCCAAGAACTGCAATTCAGAATGCCAGGT
TGATGCATTAATATTTGCCATTCATTGTGGAAAAGGAGCTACAAGCCTACAAGGACTCAATTAC
AACATTACCTCTTCATGCTCTAAGGTATGAGCGAGGGGTAGTATAACCTGACTGCCCATAAACC
CGCTGGTCCTTAAGCCTGGAACTGCATATGGGCTGGCTCGCAAAGAAGCAGCAGAATAAGCATC
AACACCAGGATCAGCCCATTCAGAACGATGCTCCCTCAGAAATCGCACAAGTAGAGCAGGAGGT
ACATTCTACATTATAAAAAAAATGACATTTTGTAAAGCTTAATTCTTTGATTTGGAACAATTTT
GGTCAAAGTGAAACAAAGATAGAGACAATCTATAATTAGCTGAGCAACTAAATAGAGCCTATGT
CAACCTGAAGTAGCATTGATGCCTTTGCGCACAAGATGCCACCTCCAACAGTAGAAAACAGAGG
GTTCGGGCTGACATGGGATCCAACAAGCTTGTTTGGAGACGAGTTTACTGAAATTGTAATGTCC
TCACTACCATCACTGCTCAACAAAGACCACCCATCATCTGGAAATCCACTAACAGCATCATTGA
AACCTCTGCAAATTAGAGTATGGAGTTCAGATGCGTGAGCAATGAGACATGCATGGAACTGTGT
CATATGACAGTATGCCAATTGGTTCTAATACATGGGAACCCTCAAATAGCTACAGACCTGCTGA
GCCTTTGACTGAAGGTCCTGAAAACAGCAGGCTGGCGACCAGCACCGTAGGGGATTTCACCGCT
TGACTCATGCGCAATTTGCCTAATGTGTCGCAATGCCTGAACAGAATGAACCATGTCATTGGTG
ATAAGAAAAGTTATGCACTCACAATCACCATGAGGTGACCAAGTGCTCTTCAACAACAGAATAA
AACAGTGCACATACTGCAATGGTCATCTTCTGTGCAAGGATCTTTGGAGATTCATAGAGCGGTC
GAAGAACCTCAGGCACACTCCAAGCCTGTAAAATACACAGGATTAATAAGATATGTATCTCAAA
ACTATTCAATATTACACTAGTTAATGTGAAAACACTATTGTTACTTACATCCAAATCAACATGA
TCAACAATGTAAATCATGGAGCCACCTCCCTCACATGGTCGAATCAGATAACCACTGGGAAGTA
CCTCGGCTCTGATAAAATTCGGAGTGTTAGGCCCAGATGGGCCACCAGTGGACTGAGTCAATGA
CCTTTCACAGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.149370417
Functional Information
Coding potential Y
Potential coding position 25924180-25921712(+)
25924097-25921457(-)
Potential amino acid sequence MGHQWTESMTFHRSSENSTVLRRCASTGAPGENRHLRYQTNGYLLRCEPYSSYQSS*(+)
MIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEIPYGAGRQPAVFR
TFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNKLVGSHVSPNPLFSTVGGGILC
AKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAASLRASPYAVPGLRTSGFMGSQVILPLA
HTLEHEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDESFADDAP
LLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGGASRASVEASGTCNRSVLTIAFQFSYENH
LRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIGRSYRAHTGA
DIRWSDTEDADSPLALLWKHSDAILCCSLKICERSLTQSTGGPSGPNTPNFIRAEVLPSGYLIR
PCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEIPYGAG
RQPAVFRTFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNKLVGSHVSPNPLFST
VGGGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAASLRASPYAVPGLRTSGFMGS
QVILPLAHTLEHEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDE
SFADDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGGASRASVEASGTCNRSVLTIAF
QFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIGRS
YRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLKICERSLTQSTGGPSGPNTPNFIRAEVL
PSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSG
EIPYGAGRQPAVFRTFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNKLVGSHVS
PNPLFSTVGGGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAASLRASPYAVPGLR
TSGFMGSQVILPLAHTLEHEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENATSASAQL
VFAPIDESFADDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGGASRASVEASGTCNR
SVLTIAFQFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTL
ASWIGRSYRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLKICERSLTQSTGGPSGPNTPN
FIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQ
IAHESSGEIPYGAGRQPAVFRTFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNK
LVGSHVSPNPLFSTVGGGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAASLRASP
YAVPGLRTSGFMGSQVILPLAHTLEHEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENA
TSASAQLVFAPIDESFADDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGGASRASVE
ASGTCNRSVLTIAFQFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPA
SPEALTLASWIGRSYRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017