Detail information of Zm00001d013013_circ_g.4


General Information
CircRNA Name Zm00001d013013_circ_g.4
ID in PlantcircBase zma_circ_008348
Alias zma_circ_0002064
Organism Zea mays
Position chr5: 3210139-3213101  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d013013
Parent gene annotation Magnesium-chelatase subunit ChlD chloroplastic
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d013013_T006:6
Zm00001d013013_T001:6
Zm00001d013013_T007:7
Zm00001d013013_T002:7
Zm00001d013013_T003:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCCATCACTGTCTTTGCCGTCCCACGCTTCCCTGAGATGGCAATGCCTCCGATCTCACGATC
AATCGCCCCAAGCAGCAGAGCAGTTTTGATAGCATCctcttggtcttcgtcttcctcatcttgg
tcttctgaagaatcttgattttctggaggtggtggtggcgggggtgggggtggttgctcttgct
gctgatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTGGTCTTCGTCTTCCTCATCTTGGTCTTCTGAAGAATCTTGATTTTCTGGAGGTGGTGGT
GGCGGGGGTGGGGGTGGTTGCTCTTGCTGCTGATCCTGTGGATTATCAGATAGGATGGAGCGAG
GTAGAATGACTAGCTCTACCTGCAACAAGGAGCCGAGTGTGTCAAATGTCAAATTTGCTGATAT
GACACTTCCAAGTTGTTTGCACCAATGTTGTGCAATACATATTGTTATTTGCTAATTTGTTTTT
CACTCATTTCTTGTAGTCAAGTAAAGATACGAACACCTTGCCCAAAATAAAGGTAAAGTTATGA
ATGGAACAAATATGTATTGCTTAAATTCCTAGATGTATATTACTGTATTACAAAAATGAAGAAT
GAACAGGTAGACTTAACAGCTTTCTTGAGGTCATCCACAAATACTTTTTCACGTCCTTCCATAG
CAGCTAGACATTTTGCAACTCGAGCAGCATACAACTCAGCACGATGCCCCTGCAGTTAAGTGTT
AGAAAATATGCTTTGAATTATAATTATAAGTTTATAAACACATTAATTTCCAGATTTAGCATTA
ACCTTACTAAACTGGCATATTCCAAACAAGCATGATTCTTGTGAAGTAAAAAGGAGATATGATT
TGCAGAAATAACATGACGGACACCAGGCAAATTTAGTGTGTAGACAACTGTGCAAGGCGGGGCT
ATATTGACATAAGGATTCGGCAATAAACACTACTGGGAAGATATCAAGGATTACAAGTACATAG
TTGGCTGCACAAGGTAACAACAGAATATGGGAGCAATTTTACACAGGATGTGATACTATTAGAA
ATATGCATCCAAGTCCTACAAAGTGCTTAAAGTCAGGTGATTCTGGTATGAAACATCAAGGTCC
AACAAGTTAACTAACCTGACAGCCACCTCGTATAGCTTCCATGACAAGATATTTGAGCTGCTCT
GTGCTAATAGTAACATCCTTCAGATACTCTCTTGCAAAAATTATCTGTGTGACCACGTGTTCCC
CTTGTGAGATGAACAGTACATAACAAAATTTTCAAATTAAACCTATAATTATTACTTTCAACTA
CTCTGATGTCATGGTCAAATATAAAATGTCTTTTAACAGCAACAAAAACTGAAGTATGAAAAAG
AGTGACAAAATGGTAACCATTATTAATTTATTATAGTCTTATCTTATGCAGCATATCATTTCCA
GTTAATAATGGTCAGCAGTAAGCAATAACATATCACAATACTTTTACTGGTAATCCCAGTCAGG
CATAGTGGGATAGCTGACAGAACTAAAATTCTAAGGCACTTGAAAGCTTGCATGCAACACAAAT
TTAAATCCGGATGGAACAAACTAATAAAATTATATTTAAGTACATCTTGTTACACTTACAGGAA
AGCTGTGTGTTTACTGTTTTATGTGGAATTCTAGGCTGCTAGCTTTTTTTAGTCAATAGAGTGA
GGAAGAACTACATGTGGCCACATTGTTTCATAATAACAGCCATGGGTGCCACATTCTTTTCATC
CAATCCCTTTCTCTTTATTGCAACATCATGATTATATAACATTTCTCATGAGGTAAGTAGGACA
CTAGCAGACATGTCAGGTCTCCACAGTTTAAAGTCATATCATGCATTATGTTTAATATACTTTA
ATGCTTTCATGTGGTTATTTGCTTCTCTGTTGTAATCATGTTTGTTTGTTTGGTAACTACCATT
CTAATAAGCACCAAATAATTGTTCATGAAAGAAAATTGTAACAAGGGCAAGAAACAAAAATAAC
CAATGTATTGATTCAATAAAGGAGGTATAAATTACAATTACAGCTCTATCCAACTATTTTCACA
CTACTAGAGTACTAGTACCTGAGTTTTTGCAGTTTCAGTTTTTTCTTCCACCATTTTGAAAACT
TCTTTGCTAGACTCCTGAAACCGTGTTGCAATATCCACTGCTTCAACGCGGTCATCAAAACTCA
TTGGAAGATCAGCACTGCACCAGCAAATAGTAGTTCAAGAATGTCGTAAAGAATTCTTATATTA
GATTGCAGTAGTTCATGATAAATAAATAGGAAATCAAAAACTTGCAACTGATCATTCAGTGTAA
AGTACCTTAAATTAATTGCAATACGATCAAGCAAGTGTTCACGTACAGACCCTTCCTCTGGATT
GTAAGTAGCAATTAGAAGTGGTTTGCAGGGATGGCGAAAGCTAATGCCCTCTCTTTCCACAATG
TTAACTCCCTCCGTCAAGACATTCAGAAGTAGATTGCTTATGCCATCATCCAATAGATTTATTT
CATCAACATAAAGAACACCTCTATGTGCTTCAGCAAGAAGACCAGGTTGAAATACAGTAGTCCC
TGATCTCACAGATGCTTCAACATCAACTGATCCAATGAGCCTATCCTCCGTCACACCAAGTGGA
ATCTGTCACGAGGAACCAGCAGCATTGATAAGCTAACAACATTATGAAGAAATGCCATAACAAT
AAGTCAGTGTGATGTACCTGCACAAAAGGTGTTTTGACAATCTCGGATTTGACATTACCATCAG
AGTCATACTGTATTTGATCAGCTAAACCATCCTCCCATCTGCCATAACGAAACCTCAATGAAAT
GAGCTAGCACGTCCCAGGGACAAAAATAAACGAGCCTAAGATTTTTGTGATTTGACTCAAAAGA
ACAAACTAAGAATTGGAATCAAAACGAAATAGTTTGAATGGCACAGGAAGGAACCCTTGCATCA
TTACTATCATATGAAGTGTTAGAGGGCATTACTCGTCAGGGGAGTTAGGGTCAGCATTTGCAAT
GGAACCAACCACCACTTCAATGGGTGGAAGCATAGCATGCAAACCACGAGCCATCACTGTCTTT
GCCGTCCCACGCTTCCCTGAGATGGCAATGCCTCCGATCTCACGATCAATCGCCCCAAGCAGCA
GAGCAGTTTTGATAGCATC
Conservation Information
Conserved circRNAs NA
PMCS 0.082592404
Functional Information
Coding potential Y
Potential coding position 3212954-3210181(+)
3213010-3210141(-)
3210163-3213010(-)
Potential amino acid sequence MEPTTTSMGGSIACKPRAITVFAVPRFPEMAMPPISRSIAPSSRAVLIASSWSSSSSSWSSEES
*(+)
MARGLHAMLPPIEVVVGSIANADPNSPDEWEDGLADQIQYDSDGNVKSEIVKTPFVQIPLGVTE
DRLIGSVDVEASVRSGTTVFQPGLLAEAHRGVLYVDEINLLDDGISNLLLNVLTEGVNIVEREG
ISFRHPCKPLLIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRVEAVDIATRFQESSKEVFK
MVEEKTETAKTQIIFAREYLKDVTISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGR
EKVELVILPRSILSDNPQDQQQEQPPPPPPPPPPENQDSSEDQDEEDEDQEDAIKTALLLGAID
REIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVGSIANADPNSPDEWEDGLADQIQYDSDGNV
KSEIVKTPFVQIPLGVTEDRLIGSVDVEASVRSGTTVFQPGLLAEAHRGVLYVDEINLLDDGIS
NLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRV
EAVDIATRFQESSKEVFKMVEEKTETAKTQIIFAREYLKDVTISTEQLKYLVMEAIRGGCQGHR
AELYAARVAKCLAAMEGREKVELVILPRSILSDNPQDQQQEQPPPPPPPPPPENQDSSEDQDEE
DEDQEDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVGSIANADPNSPD
EWEDGLADQIQYDSDGNVKSEIVKTPFVQIPLGVTEDRLIGSVDVEASVRSGTTVFQPGLLAEA
HRGVLYVDEINLLDDGISNLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGSVREHLLD
RIAINLSADLPMSFDDRVEAVDIATRFQESSKEVFKMVEEKTETAKTQIIFAREYLKDVTISTE
QLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGREKVELVILPRSILSDNPQDQQQEQPPPP
PPPPPPENQDSSEDQDEEDEDQEDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAMLP
PIEVVVGSIANADPNSPDEWEDGLADQIQYDSDGNVKSEIVKTPFVQIPLGVTEDRLIGSVDVE
ASVRSGTTVFQPGLLAEAHRGVLYVDEINLLDDGISNLLLNVLTEGVNIVEREGISFRHPCKPL
LIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRVEAVDIATRFQESSKEVFKMVEEKTETAK
TQIIFAREYLKDVTISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGREKVELVILPR
SILSDNPQDQQQEQPPPPPPPPPPENQDSSEDQDEEDEDQE(-)
MRKTKTKRMLSKLLCCLGRLIVRSEALPSQGSVGRQRQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b