Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d013013_circ_g.4 |
ID in PlantcircBase | zma_circ_008348 |
Alias | zma_circ_0002064 |
Organism | Zea mays |
Position | chr5: 3210139-3213101 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d013013 |
Parent gene annotation |
Magnesium-chelatase subunit ChlD chloroplastic |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d013013_T006:6 Zm00001d013013_T001:6 Zm00001d013013_T007:7 Zm00001d013013_T002:7 Zm00001d013013_T003:7 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.082592404 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
3212954-3210181(+) 3213010-3210141(-) 3210163-3213010(-) |
Potential amino acid sequence |
MEPTTTSMGGSIACKPRAITVFAVPRFPEMAMPPISRSIAPSSRAVLIASSWSSSSSSWSSEES *(+) MARGLHAMLPPIEVVVGSIANADPNSPDEWEDGLADQIQYDSDGNVKSEIVKTPFVQIPLGVTE DRLIGSVDVEASVRSGTTVFQPGLLAEAHRGVLYVDEINLLDDGISNLLLNVLTEGVNIVEREG ISFRHPCKPLLIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRVEAVDIATRFQESSKEVFK MVEEKTETAKTQIIFAREYLKDVTISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGR EKVELVILPRSILSDNPQDQQQEQPPPPPPPPPPENQDSSEDQDEEDEDQEDAIKTALLLGAID REIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVGSIANADPNSPDEWEDGLADQIQYDSDGNV KSEIVKTPFVQIPLGVTEDRLIGSVDVEASVRSGTTVFQPGLLAEAHRGVLYVDEINLLDDGIS NLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRV EAVDIATRFQESSKEVFKMVEEKTETAKTQIIFAREYLKDVTISTEQLKYLVMEAIRGGCQGHR AELYAARVAKCLAAMEGREKVELVILPRSILSDNPQDQQQEQPPPPPPPPPPENQDSSEDQDEE DEDQEDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVGSIANADPNSPD EWEDGLADQIQYDSDGNVKSEIVKTPFVQIPLGVTEDRLIGSVDVEASVRSGTTVFQPGLLAEA HRGVLYVDEINLLDDGISNLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGSVREHLLD RIAINLSADLPMSFDDRVEAVDIATRFQESSKEVFKMVEEKTETAKTQIIFAREYLKDVTISTE QLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGREKVELVILPRSILSDNPQDQQQEQPPPP PPPPPPENQDSSEDQDEEDEDQEDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAMLP PIEVVVGSIANADPNSPDEWEDGLADQIQYDSDGNVKSEIVKTPFVQIPLGVTEDRLIGSVDVE ASVRSGTTVFQPGLLAEAHRGVLYVDEINLLDDGISNLLLNVLTEGVNIVEREGISFRHPCKPL LIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRVEAVDIATRFQESSKEVFKMVEEKTETAK TQIIFAREYLKDVTISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGREKVELVILPR SILSDNPQDQQQEQPPPPPPPPPPENQDSSEDQDEEDEDQE(-) MRKTKTKRMLSKLLCCLGRLIVRSEALPSQGSVGRQRQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |