Detail information of BGIOSGA014874_circ_igg.1


General Information
CircRNA Name BGIOSGA014874_circ_igg.1
ID in PlantcircBase osi_circ_014459
Alias Chr04:24473584_24474364(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22367825-22368605  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAGGTTGGCGGCCAGAAAGGCTGGCTGCAGGGAAGGCGCCATCACGCATCAAACCTGAAGCT
TGGCGTCCATCCAGCTGTCCACGGTATGCCATTATAccttgagctcgtttttcagcatttgcca
catcagcacgcaacttgtcagcctctttggtcatagtcattaaattcatctccatcgtccgcat
ctgctcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGAGCTCGTTTTTCAGCATTTGCCACATCAGCACGCAACTTGTCAGCCTCTTTGGTCATAG
TCATTAAATTCATCTCCATCGTCCGCATCTGCTCAACTTGCTTGATATTTGTGTTTTTCTCATA
TTCAAAAGCAGATCTATGCATGGTTACGGGAAAACATCATATTATCAGAGGCCTGTTCGCCACC
AAAGCTCAGGAGTGTATGGAAAATGTAAAAAAGGAATAATATCACAAACCTTAGACTCTGATGC
TCTTTTCGGAGCCCATCTAGCTCAGTCAGTAATTCAGGAAGTTTCTTACTGTCACCAGAGAACT
TATGTAGCTCTTTAGTTACTTTATCCATCTCAACAGTGAGCATCTGCCTCTCAGCAATAAGTCT
CTTTGCCTCCATATGCACTTGATGAAGTTCCTTCTTCACTGCATCACCAGCTTGTATATCTGCT
TCCATCAATCTCATTCTCTCCATCAAATCTCTCATATGCATATCAGTCTCTGTCTGAACATCAC
CTAGGTGAGCACGGATCATTTGCATTTCTTTCTCAGTATCAACAATATCCTGCCTCAAGACGAC
ATGGCTAGATGCCAATCGCTGATTCTCTCTGATAAGCTTTTCTGCCTCGGCGGTCTGCTCAGCA
AGTTTCTTTTCCAAGATCTCCAGAGCGGTGGCAGCGCGATCCAAAGGTTGGCGGCCAGAAAGGC
TGGCTGCAGGGAAGGCGCCATCACGCATCAAACCTGAAGCTTGGCGTCCATCCAGCTGTCCACG
GTATGCCATTATA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021