Detail information of BGIOSGA033107_circ_g.1


General Information
CircRNA Name BGIOSGA033107_circ_g.1
ID in PlantcircBase osi_circ_008500
Alias Chr10:19115382_19115803(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16023272-16023693  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033107
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033107-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTCACGAGATACAACAAGAAGTTTGATTCTTGGATCAATAGCCAACAGATTGTGCAACCTGA
TGGGTATTTGCCTTCTGAGGGTGTATCAATGATAAGgagagaagaaaaggatatattggatgta
ttgagaaaccgtgctagaggtcgtgcacaatggtggggtgtttctgtattcatctacaaattta
aatatggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGAGAAGAAAAGGATATATTGGATGTATTGAGAAACCGTGCTAGAGGTCGTGCACAATGGTGG
GGTGTTTCTGTATTCATCTACAAATTTAAATATGGCGGAGTTGATAACCAATGGTACAATGAAC
AGACTTTCCTGAACACTCACATTGATGAGAGCTTCACAAAGGACAAACCTCAACAAGTGAGTAT
TTGGACATGTCCTTTAGATGAAAGGCAGAGAGTAGAGTTATCAGTATCACTGCTTTGGGGTGTA
AATCACTTCGCCATATGAAGCCAATCTTCTTAACATACAACAAGAAGATTCAAAAGATTGTCGT
TGGCTTCACGAGATACAACAAGAAGTTTGATTCTTGGATCAATAGCCAACAGATTGTGCAACCT
GATGGGTATTTGCCTTCTGAGGGTGTATCAATGATAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021