Detail information of Solyc02g090640.2_circ_igg.1


General Information
CircRNA Name Solyc02g090640.2_circ_igg.1
ID in PlantcircBase sly_circ_000821
Alias 2:46761668|46766531
Organism Solanum lycopersicum
Position chr2: 52183818-52188681  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc02g090650.2_circ_igg.1
Support reads 6
Tissues fruit
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCGAAGTGACACGAACAACTGCATGAATAGTTTCTGCGTATTTTGGATCGGGTTTAGGGAAA
TCATCTAGGTCTGGAAGAACTGCGGTGGCGACGTGCcttaactgccgtcgtaatcccaactttt
gacatcaaggaacttcagcctgtcatcttcagctcatatgaggtatcttctataccccttaata
gtactgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAACTGCCGTCGTAATCCCAACTTTTGACATCAAGGAACTTCAGCCTGTCATCTTCAGCTCA
TATGAGGTATCTTCTATACCCCTTAATAGTACTGTAAATCATTAAAAAAAAAAGAAATGGTAAA
GTGAAACTAACCATTTCCTGTAGACAAAATCAAAACCTGTTTTGGATGCGGAACTGGCGGACAT
TTGCATTAGTACCTCGGCAGCGCCAACATTTCTACCTGCCCATAATTTCAAGACCAAGGATGCT
CAAAATAATGAAAATGAATTCAACCTAATTGATGGTGGTGTGGCTGCTAATAACCCGGTAAATA
AATGTATAAATTCTTGAATGATCAATACATTACAGTAGAAAATCCGGTAATATATGTATTGATG
AATATTTTAGACATTGATCGCAATTGGTGAGGTGACAAAGCAAGTACTGATGAAGCATGAAGAC
TTATTTCCTATCAAGCCCTTGGATTATGGTCGTTTTCTAGTGATCTCACTGGGGACAGGCAATG
CAAAGAACGAGGGAAAATACAATGCTAAAATGGCTTCGAAATGGGGATTACTTAGCTGGCTAAC
TCATGACAACTCCACACCAATCATTGAAGCATTTAATCAAGCAAGCGCTGATATGGTTGATTTT
CACAACTTTGTGGTTTTTAAAGCTCTTCAATCGGATGATCAATACCTCCGAATCCAGGTATATA
TCTGTCACACTGAATAGACATGTTATAACAATTTATTTGCCTTATTTTTTCAGAAATATTAATT
AATCTCGTCTGCTGTTTGATACTACCAGGATGACACTTTGACAGGGAACTTGGCCTCAGTTGAT
ATAGCGACAAAGGAAAACTTACAAGGCCTCGTTAAGGTAGGAGAGAAGTTGCTGGACAAACCAA
CTTCCAAGATAAACTTAGACAAAGGAGTTTATGAAGCAGTTGAGAACGGAGGAACCAACAAGGA
AGCTCTTCGAAGGTACATACACTTGTCTCTCACATTTGTAGACGTTCAACATTCATTATATATA
AACAACTGAGGAAATAGTACTACCATTGCCTCATTTTGAAATGTTGCAGGTTCGCAAAGATACT
TTCAGATGAGAGAAAGTTCCGCCAGTCCAATGCCGGCCAGTAGCCGGTTGGTCTAAATGGAATT
GTATTGTCATCCATTTCTGTGTATTATTTGTTTCAGTTAAATAATTTTCTACTTAGCTATTTCT
TTTTATGATTTCATAGTACTTTCACATATATATATATAAAGTCGATCCACTTGGGAGACTCCAA
AAACAAAGTTAACAAATATAGACACAAACTGCAAAAAGCACTGCATCTGTAAACACGTTATAAA
CTGAAGTAATCTCTAAAAATTGTAATAGAAATTAGATTCTTAAGTGAGTAATTTCACATAATTA
AGTACCTGGGTAATTCACTCCATACAAAACAAAGTATAAAGTAAAATCAAATATAAAGTTGCAA
ACATAAAAATGATAAGGTAGCTGTTTGTGGTGTACCCCTATATTTGAAAAATACAAAAAGAGAA
CTTTTAACTGAAATCTAGTTGCTGCTGCTTCAGAAATTCGGGTCTGAAGTTGGGCTCGGGCGAA
TGGGCCTAGAACGTCGTCATATGCTTTGGCATGTCACCGCCCAGAAGAGAAATTATGAGCTGGG
GCATCAGCTATTTAACATACAAAATTGAGATACTATCACCCAATCATCCTATTTTAACTAACAC
AGATGAACAAGGTCATGCAGTAAATAACATCAGCAGACAATGTCCCAAGTTGTGGAATCAATCC
TCCCTTGCATAATAAGCTTTCTAAGATTTTCAGACAAGTGCTTCAGTAAAAATCATTTCGATTT
TTTTTATCAGAAATCCTTGCTCCTGCAATCTTGACAACAGGGTGATCCTTTGGTTGGATAAGCT
TCAAAGCTAGATGAACCCTCAGATCACCCATTAACTACTTTTGGTTAACATCCACAATTCACTT
AAGTCTACATCAATGTAGGGAGGGATGACATCCGCTGGGCATAGAAACTTTACCGTTCTCTTGA
TGATATTCAAATATAACCCTACCAAATTGGTTAACCGATAATTATTAGAAATATAACAACATAC
CCGCTTGAAGTCCAACTAAGTGAGGTCTAGGGAGGGCCGATGATTATTAAAAAAATTTTAAAAA
ATAAATAAAGAAAAACAAAAGCGCAAGCAAATAGGAAATGGATATCATCTCACATGTTATCCGT
GTTTCCTTTCATCATTTTATCCTTCAGCAAGGATTCTTTCTTCTGAAATTGACCATCAATTCTA
AGAGAAGCATTAATTATGAAGCTCACTAAGTCATAAGATACAGATTTCATATATTAGCTGAAAG
AATAGACAACGTACCCCACAAACAGATCGTGGGCTCATGTTTTTAAGCATTATTAAAAGAGGAA
TTTATTGAATTGGGCTAACCCTATTTGAAACTAAAGAGCAGCCCGGTGCACTAAGCTCTAGATA
TTGCATAGGTGCGGGATGGCCGGACCACAAGAGTCTATTGTAGGCAGTGTTACTGGCATCTATT
TGAATAAAAAGGAAGCATAATAGTAATTAGGTTTACTCTTTACGCCCTATCCTCTACTTTTAGT
TGCTCAAATCTTTGTATTTACCTTTTTTGATCAAATGGCAGAGGTAAGTTAGACTATCTGGGTT
TTAGTCATACATCTGAGGTATAATGACCTCAGCAGCTGTTATAAACTATCCAATATGAACCTCT
ACTATGTAAGGTGGACAAATTTGACTGTTATCATTCTCAAAAAAAAAAAGGTGGACAAATTTGA
AGTAACTGTAAACATTTTTTTTTAGAAATGCAGTGAGTTATGTTTATCATTAAACAAGTTTATG
TCCGTATTTTTTTTTATTTTGAAAAAGGTAACTTTATGTCCCGTATTTATCATTATGATTGTCA
TTTTTTTTTGGAGAAGGTAGTGTATTTTATAAATGATCAGCACTAAGAAGTGCTGTTAAAAATC
TGCATCTGCAGCAAAAAGGGAACTTCACAAAAATCTAACCCTTCTAGACCTGTAGTGATTCTAT
CACATCTGGAATAAATTAGTTTAAGCCTCATTTATTTGTTGCATTTTTTACATCAAAAAAGAAG
AAGAAGCTAATATTTGGATTTTCTCTTCTAAATGTTGTTTTCCATGTCTTGAAAACATCTTCTA
TTTCTCTCAATCCACACAGTTCACCAAACAGCAGCTGGTGCAGTGTTCCCTTTTGATTGCCTTA
TTGACTTACTAATAGGTAAGACTTGAGAACACTTTAACCCTAACTTTTCCTCTTTAGAATTCAT
TGTGTTTCTTCTCAACCATAAATCCGTAATGGAATTCAAAGTTGATGAACCCAAGGCGGAATGA
CTGGGATCTAACTATATTATTAGAAGATGGCTGCATCAGCTCTTTTACAGAGTGAGAGATGACT
GAAGCGCTGGACATCAACGTCCTAGCCAGATAGCTTTACTACAGTTCTTCACCAATTTTTTTTG
GCACATCTTTAGAAACGGGATGCTCTAAACTTATAGCAATTCTATCCTGAAGGAAGATTTTAGA
AGAGCTTCACTGTGCTTAACGATAGGGAGAACTGAATTAAGAGACTTCAAGCCAATCCGATCGG
TAGTTAGTAGTAAATGATTACAAAATCACTTGCTGAAAGACTAAAGAGGGTAATAGTTGCATTG
ATTTGAAGTAACATCAAATGAGTGCCTAGAGAACCTGGAGGTCTAAGAAAACTTGACATAGTGA
GGTCTAAGATCTACTAACTGGAACCTCCTCCTGATTCCTGAACACTAAAATAGGATCTGATCGA
AGATGGTTTAAACAGATAATACATTCAATCCAGAGGGTAAGACTGCCGGTGCTGATTAATGGGA
GACCAGCGGGGTTGTCACAAGACTTGGACAAATAGCAAGAAATAACCAGGCATGTTTCACCTAA
TTTGGGATTTGAACCCTACCCTCCCATGGCTCCCAATTAAAACAGCTAGATTACACACTTGGGT
GCTCTACATTGAGAAACTTCTAGGTCCATCATAACCATATAATATTAGCATTTAATGAATTCAA
GAAAACCAGCCGTTACACCTTAGGATAAAGAACTGATGCAAGTGTAACATATGATAAGCTAAGT
TTCAATACATCACTACGCAAACCTACATAGTAAGGAAATTGAAGACTTCATAAAAAAATAAAAT
AAACATGTATTAGCAAGTTACCAATAGGAAAAAGCAGATGTATCAATTACTCACCTTTCTTCAA
ACCGGAGCCTCTAAATATAAGAGGAACCCCAACCTTTAGTAAAGCACTTGATGGAGCTCTTTTA
AAGGTAACATTACGAGGCGCATCTGAACCAGCTTCCAGATGAACCTGAACATTGAAATAGATAA
ATCAGTACATAGACAGCTCTGTTTCCTGAACTACAGCTCCTATGTATAAATGAATTGAAAGCCA
CTATCTATCTTCATACCAATTCAAAGTAACAAAATCTAATAAATAAAGGGAAAATACCTTTCTG
AGCAGAACTCGAACTTTCTCAATAACGTCAGTAGAGGGTAAACCTCATGATCAAACAAACTGGA
TAAGAAATGGGAGTGACCGAGATGGTTAACAAGCTTCCTTATCTGATTAGCCTAAACAGAGATG
AGTCTTGTGTTACCACCATGTTGGGCATCCTCTTGTTCAAACACTATGCTGGGTACCCGCCCAG
CTTTCCTCTCTTTGGCGGCGAAGTCCTTTCCCGAAGTGACACGAACAACTGCATGAATAGTTTC
TGCGTATTTTGGATCGGGTTTAGGGAAATCATCTAGGTCTGGAAGAACTGCGGTGGCGACGTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.479761926
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yin et al., 2018