circRNA
Detailed infomation of each circRNA
Detail information of Zm00001d044570_circ_g.1
| General Information | |
|---|---|
| CircRNA Name | Zm00001d044570_circ_g.1 |
| ID in PlantcircBase | zma_circ_007921 |
| Alias | Zm03circ00139 |
| Organism | Zea mays |
| Position | chr3: 231987178-231992302 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ue-circRNA |
| Identification method | CIRI2 |
| Parent gene | Zm00001d044570 |
| Parent gene annotation |
Pre-mRNA-processing protein 40A |
| Parent gene strand | + |
| Alternative splicing | Zm00001d044570_circ_ag.1 Zm00001d044570_circ_g.2 Zm00001d044570_circ_g.3 |
| Support reads | NA |
| Tissues | leaf, endosperm |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d044570_T020:14 Zm00001d044570_T036:14 Zm00001d044570_T002:14 Zm00001d044570_T022:14 Zm00001d044570_T063:14 Zm00001d044570_T023:14 Zm00001d044570_T025:14 Zm00001d044570_T061:14 Zm00001d044570_T007:14 Zm00001d044570_T027:14 Zm00001d044570_T065:8 Zm00001d044570_T001:14 Zm00001d044570_T014:14 Zm00001d044570_T067:5 Zm00001d044570_T032:14 Zm00001d044570_T004:4 Zm00001d044570_T019:14 Zm00001d044570_T008:14 Zm00001d044570_T066:5 Zm00001d044570_T046:14 Zm00001d044570_T044:14 Zm00001d044570_T064:14 Zm00001d044570_T040:13 Zm00001d044570_T006:14 Zm00001d044570_T026:14 Zm00001d044570_T013:14 Zm00001d044570_T018:14 Zm00001d044570_T003:14 Zm00001d044570_T052:14 Zm00001d044570_T049:14 Zm00001d044570_T012:14 Zm00001d044570_T034:14 Zm00001d044570_T039:14 Zm00001d044570_T005:14 Zm00001d044570_T048:14 Zm00001d044570_T028:14 Zm00001d044570_T031:14 Zm00001d044570_T037:14 Zm00001d044570_T068:4 Zm00001d044570_T015:14 Zm00001d044570_T051:14 Zm00001d044570_T045:14 Zm00001d044570_T050:14 Zm00001d044570_T041:14 Zm00001d044570_T043:14 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.050447187 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
231987194-231992299(+) 231992064-231987256(+) 231987196-231992211(-) |
| Potential amino acid sequence |
MPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGA LKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDE RFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERL EDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRDQVRRQERKNRDGFRKMLEEHVADGTLNAR TRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTS WTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEAK KTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRY GALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFED DERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQE RLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRDQVRRQERKNRDGFRKMLEEHVADGTLN ARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMT TSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKE AKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDK RYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMF EDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKV QERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRDQVRRQERKNRDGFRKMLEEHVADGT LNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIP MTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSI KEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIIN DKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAIL MFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWR KVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRDQVRRQERKNRDGFRKMLEEHVAD GTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGK IPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLY SIK(+) MMLLKEYQPSTSSLSMMISLKGSRKKSKRRLRSASVWVKIFQIFCIPSRRPKRPCQLQGRLMSL QWRRKQVKKNL*(+) MVFLASLMEYKRSEKFSPKRWRFLASFCSFSLSLSS*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Han et al., 2020 |
