Plant Circular RNA Database

Detail information of Os07g0507300_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0507300_circ_g.1
					
						ID in PlantcircBase
						osa_circ_033977
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 19259104-19265683  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0507300						
					
						Parent gene annotation
						
							Similar to GCK-like kinase MIK. (Os07t0507300-01);Similar to GCK
-like kinase MIK. (Os07t0507300-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0507300_circ_g.2 Os07g0507300_circ_g.3 Os07g0507300_circ_g.4 Os07g0507300_circ_g.5 Os07g0507300_circ_g.6 Os07g0507300_circ_g.7 Os07g0507300_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0507300-01:18
Os07t0507300-02:18

General Information
CircRNA Name	Os07g0507300_circ_g.1
ID in PlantcircBase	osa_circ_033977
Alias	NA
Organism	Oryza sativa
Position	chr7: 19259104-19265683 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0507300
Parent gene annotation	Similar to GCK-like kinase MIK. (Os07t0507300-01);Similar to GCK -like kinase MIK. (Os07t0507300-02)
Parent gene strand	-
Alternative splicing	Os07g0507300_circ_g.2 Os07g0507300_circ_g.3 Os07g0507300_circ_g.4 Os07g0507300_circ_g.5 Os07g0507300_circ_g.6 Os07g0507300_circ_g.7 Os07g0507300_circ_g.8
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0507300-01:18 Os07t0507300-02:18

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TGGTAAATAAGGAGTCAGAGGGAACTTCAGTGAAGAGACTCACGCTTCTTCTAAATCGATAACT
TTTATTGCAACTTCCTTATGCAGTTCCTTGTCAAACcttgtaagaaggaacctcgccaaagggc
ttacggtaggggcagccaaggaaggtgtattagccattttcttgttacttggaggttcagaggg
aggttcag

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	TGGTAAATAAGGAGTCAGAGGGAACTTCAGTGAAGAGACTCACGCTTCTTCTAAATCGATAACT TTTATTGCAACTTCCTTATGCAGTTCCTTGTCAAACcttgtaagaaggaacctcgccaaagggc ttacggtaggggcagccaaggaaggtgtattagccattttcttgttacttggaggttcagaggg aggttcag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.105847799

Conservation Information
Conserved circRNAs	NA
PMCS	0.105847799

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							19265315-19259235(+)
19265666-19259219(+)
19265113-19259106(-)
						
					

						Potential amino acid sequence
						
							MSSMSSSASSKSITFIATSLCSSLSNLVRRNLAKGLTVGAAKEGVLAIFLLLGGSEGGSDFFAK
TDVAVS*(+)
MQFLVKPCKKEPRQRAYGRGSQGRCISHFLVTWRFRGRFRFLCEN*(+)
MEYMAGGSVADLLQTGPPLDELSIACILRDLLHAVEYLHSEGKIHRDIKAANILLTESGDVKVA
DFGVSAQLTKTMSRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPLADIHP
MRVLFMIPRENPPQLDEHFSKPMKEFVSLCLKKNPAERLSAKDLLKHRFVRNARKSPKLLDRIR
ERPKFPVKSSADATQNGRTHVEEDDGTGTIKVERATRDVVSPSSQGTVRKAAGWNLPDRSEGTG
TVRGGLKPSQVTSTKDSRSDASHSPNTPKRTADRENQWRTSWTGSEESISTNPSQRDAQSEYGR
LESSTEDNDQSISGSGTVVLRSPRASQVYPAATNHSSKPPSRFSSYEDTSISGTVVRNQIEEPE
TPRSSRSRLGIQEKSPNASLEDSATNLAEAKAALQAAFKKGNARERHVISKHEKESHEPRISAV
NSHDAPSENADMEKGRKPRQIHDGQSAPQASGSVSSPALSSLIIPSLKEATGDKFNGPVVHTFL
DSLMHLEKELPGSCEVLIGRMLHRLGSSKESSLQSLQETATSVFAKKSEPPSEPPSNKKMANTP
SLAAPTVSPLARFLLTRFDKELHKEVAIKVIDLEEAEDDIEDIQKEISVLSQCRCPYITDYYGS
YLHQTKLWIVMEYMAGGSVADLLQTGPPLDELSIACILRDLLHAVEYLHSEGKIHRDIKAANIL
LTESGDVKVADFGVSAQLTKTMSRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAK
GEPPLADIHPMRVLFMIPRENPPQLDEHFSKPMKEFVSLCLKKNPAERLSAKDLLKHRFVRNAR
KSPKLLDRIRERPKFPVKSSADATQNGRTHVEEDDGTGTIKVERATRDVVSPSSQGTVRKAAGW
NLPDRSEGTGTVRGGLKPSQVTSTKDSRSDASHSPNTPKRTADRENQWRTSWTGSEESISTNPS
QRDAQSEYGRLESSTEDNDQSISGSGTVVLRSPRASQVYPAATNHSSKPPSRFSSYEDTSISGT
VVRNQIEEPETPRSSRSRLGIQEKSPNASLEDSATNLAEAKAALQAAFKKGNARERHVISKHEK
ESHEPRISAVNSHDAPSENADMEKGRKPRQIHDGQSAPQASGSVSSPALSSLIIPSLKEATGDK
FNGPVVHTFLDSLMHLEKELPGSCEVLIGRMLHRLGSSKESSLQSLQETATSVFAKKSEPPSEP
PSNKKMANTPSLAAPTVSPLARFLLTRFDKELHKEVAIKVIDLEEAEDDIEDIQKEISVLSQCR
CPYITDYYGSYLHQTKLWIVMEYMAGGSVADLLQTGPPLDELSIACILRDLLHAVEYLHSEGKI
HRDIKAANILLTESGDVKVADFGVSAQLTKTMSRRKTFVGTPFWMAPEVIQNSDGYNEKADIWS
LGITAIEMAKGEPPLADIHPMRVLFMIPRENPPQLDEHFSKPMKEFVSLCLKKNPAERLSAKDL
LKHRFVRNARKSPKLLDRIRERPKFPVKSSADATQNGRTHVEEDDGTGTIKVERATRDVVSPSS
QGTVRKAAGWNLPDRSEGTGTVRGGLKPSQVTSTKDSRSDASHSPNTPKRTADRENQWRTSWTG
SEESISTNPSQRDAQSEYGRLESSTEDNDQSISGSGTVVLRSPRASQVYPAATNHSSKPPSRFS
SYEDTSISGTVVRNQIEEPETPRSSRSRLGIQEKSPNASLEDSATNLAEAKAALQAAFKKGNAR
ERHVISKHEKESHEPRISAVNSHDAPSENADMEKGRKPRQIHDGQSAPQASGSVSSPALSSLII
PSLKEATGDKFNGPVVHTFLDSLMHLEKELPGSCEVLIGRMLHRLGSSKESSLQSLQETATSVF
AKKSEPPSEPPSNKKMANTPSLAAPTVSPLARFLLTRFDKELHKEVAIKVIDLEEAEDDIEDIQ
KEISVLSQCRCPYITDYYGSYLHQTKLWIVMEYMAGGSVADLLQTGPPLDELSIACILRDLLHA
VEYLHSEGKIHRDIKAANILLTESGDVKVADFGVSAQLTKTMSRRKTFVGTPFWMAPEVIQNSD
GYNEKADIWSLGITAIEMAKGEPPLADIHPMRVLFMIPRENPPQLDEHFSKPMKEFVSLCLKKN
PAERLSAKDLLKHRFVRNARKSPKLLDRIRERPKFPVKSSADATQNGRTHVEEDDGTGTIKVER
ATRDVVSPSSQGTVRKAAGWNLPDRSEGTGTVRGGLKPSQVTSTKDSRSDASHSPNTPKRTADR
ENQWRTSWTGSEESISTNPSQRDAQSEYGRLESSTEDNDQSISGSGTVVLRSPRASQVYPAATN
HSSKPPSRFSSYEDTSISGTVVRNQIEEPETPRSSRSRLGIQEKSPNASLEDSATNLAEAKAAL
QAAFKKGNARERHVISKHEKESHEPRISAVNSHDAPSENADMEKGRKPRQIHDGQSAPQASGSV
SSPALSSLIIPSLKEATGDKFNGPVVHTFLDSLMHLEKELPGSCEVLIGRMLHRLGSSKESSLQ
SLQETATSVFAKKSEPPSEPPSNKKMANTPSLAAPTVSPLARFLLT(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	19265315-19259235(+) 19265666-19259219(+) 19265113-19259106(-)
Potential amino acid sequence	MSSMSSSASSKSITFIATSLCSSLSNLVRRNLAKGLTVGAAKEGVLAIFLLLGGSEGGSDFFAK TDVAVS(+) MQFLVKPCKKEPRQRAYGRGSQGRCISHFLVTWRFRGRFRFLCEN(+) MEYMAGGSVADLLQTGPPLDELSIACILRDLLHAVEYLHSEGKIHRDIKAANILLTESGDVKVA DFGVSAQLTKTMSRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPLADIHP MRVLFMIPRENPPQLDEHFSKPMKEFVSLCLKKNPAERLSAKDLLKHRFVRNARKSPKLLDRIR ERPKFPVKSSADATQNGRTHVEEDDGTGTIKVERATRDVVSPSSQGTVRKAAGWNLPDRSEGTG TVRGGLKPSQVTSTKDSRSDASHSPNTPKRTADRENQWRTSWTGSEESISTNPSQRDAQSEYGR LESSTEDNDQSISGSGTVVLRSPRASQVYPAATNHSSKPPSRFSSYEDTSISGTVVRNQIEEPE TPRSSRSRLGIQEKSPNASLEDSATNLAEAKAALQAAFKKGNARERHVISKHEKESHEPRISAV NSHDAPSENADMEKGRKPRQIHDGQSAPQASGSVSSPALSSLIIPSLKEATGDKFNGPVVHTFL DSLMHLEKELPGSCEVLIGRMLHRLGSSKESSLQSLQETATSVFAKKSEPPSEPPSNKKMANTP SLAAPTVSPLARFLLTRFDKELHKEVAIKVIDLEEAEDDIEDIQKEISVLSQCRCPYITDYYGS YLHQTKLWIVMEYMAGGSVADLLQTGPPLDELSIACILRDLLHAVEYLHSEGKIHRDIKAANIL LTESGDVKVADFGVSAQLTKTMSRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAK GEPPLADIHPMRVLFMIPRENPPQLDEHFSKPMKEFVSLCLKKNPAERLSAKDLLKHRFVRNAR KSPKLLDRIRERPKFPVKSSADATQNGRTHVEEDDGTGTIKVERATRDVVSPSSQGTVRKAAGW NLPDRSEGTGTVRGGLKPSQVTSTKDSRSDASHSPNTPKRTADRENQWRTSWTGSEESISTNPS QRDAQSEYGRLESSTEDNDQSISGSGTVVLRSPRASQVYPAATNHSSKPPSRFSSYEDTSISGT VVRNQIEEPETPRSSRSRLGIQEKSPNASLEDSATNLAEAKAALQAAFKKGNARERHVISKHEK ESHEPRISAVNSHDAPSENADMEKGRKPRQIHDGQSAPQASGSVSSPALSSLIIPSLKEATGDK FNGPVVHTFLDSLMHLEKELPGSCEVLIGRMLHRLGSSKESSLQSLQETATSVFAKKSEPPSEP PSNKKMANTPSLAAPTVSPLARFLLTRFDKELHKEVAIKVIDLEEAEDDIEDIQKEISVLSQCR CPYITDYYGSYLHQTKLWIVMEYMAGGSVADLLQTGPPLDELSIACILRDLLHAVEYLHSEGKI HRDIKAANILLTESGDVKVADFGVSAQLTKTMSRRKTFVGTPFWMAPEVIQNSDGYNEKADIWS LGITAIEMAKGEPPLADIHPMRVLFMIPRENPPQLDEHFSKPMKEFVSLCLKKNPAERLSAKDL LKHRFVRNARKSPKLLDRIRERPKFPVKSSADATQNGRTHVEEDDGTGTIKVERATRDVVSPSS QGTVRKAAGWNLPDRSEGTGTVRGGLKPSQVTSTKDSRSDASHSPNTPKRTADRENQWRTSWTG SEESISTNPSQRDAQSEYGRLESSTEDNDQSISGSGTVVLRSPRASQVYPAATNHSSKPPSRFS SYEDTSISGTVVRNQIEEPETPRSSRSRLGIQEKSPNASLEDSATNLAEAKAALQAAFKKGNAR ERHVISKHEKESHEPRISAVNSHDAPSENADMEKGRKPRQIHDGQSAPQASGSVSSPALSSLII PSLKEATGDKFNGPVVHTFLDSLMHLEKELPGSCEVLIGRMLHRLGSSKESSLQSLQETATSVF AKKSEPPSEPPSNKKMANTPSLAAPTVSPLARFLLTRFDKELHKEVAIKVIDLEEAEDDIEDIQ KEISVLSQCRCPYITDYYGSYLHQTKLWIVMEYMAGGSVADLLQTGPPLDELSIACILRDLLHA VEYLHSEGKIHRDIKAANILLTESGDVKVADFGVSAQLTKTMSRRKTFVGTPFWMAPEVIQNSD GYNEKADIWSLGITAIEMAKGEPPLADIHPMRVLFMIPRENPPQLDEHFSKPMKEFVSLCLKKN PAERLSAKDLLKHRFVRNARKSPKLLDRIRERPKFPVKSSADATQNGRTHVEEDDGTGTIKVER ATRDVVSPSSQGTVRKAAGWNLPDRSEGTGTVRGGLKPSQVTSTKDSRSDASHSPNTPKRTADR ENQWRTSWTGSEESISTNPSQRDAQSEYGRLESSTEDNDQSISGSGTVVLRSPRASQVYPAATN HSSKPPSRFSSYEDTSISGTVVRNQIEEPETPRSSRSRLGIQEKSPNASLEDSATNLAEAKAAL QAAFKKGNARERHVISKHEKESHEPRISAVNSHDAPSENADMEKGRKPRQIHDGQSAPQASGSV SSPALSSLIIPSLKEATGDKFNGPVVHTFLDSLMHLEKELPGSCEVLIGRMLHRLGSSKESSLQ SLQETATSVFAKKSEPPSEPPSNKKMANTPSLAAPTVSPLARFLLT(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0507300_circ_g.1

Address

Any questions?

Supported by