Detail information of AT2G04410_circ_g.1


General Information
CircRNA Name AT2G04410_circ_g.1
ID in PlantcircBase ath_circ_012783
Alias 2:1533988-1534148
Organism Arabidpsis thaliana
Position chr2: 1533988-1534148  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04410
Parent gene annotation RPM1-interacting protein 4 (RIN4) family protein
Parent gene strand -
Alternative splicing AT2G04410_circ_g.2
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G04410.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGACATCCATAATATGATTAAAAGAAGAGGAAGAAGAAGAAGAAGAGATGCTGCGACTCACG
GCGGGTTTCTCAAGAActtccaaggcaaacacctctccacttattctgcgcgtatacagcaaaa
ccattttttctgcaaatcatgcaagaaacagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCAAGGCAAACACCTCTCCACTTATTCTGCGCGTATACAGCAAAACCATTTTTTCTGCAAA
TCATGCAAGAAACAGTATAAGACATCCATAATATGATTAAAAGAAGAGGAAGAAGAAGAAGAAG
AGATGCTGCGACTCACGGCGGGTTTCTCAAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.268237367
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020