Detail information of Os04g0596400_circ_g.1


General Information
CircRNA Name Os04g0596400_circ_g.1
ID in PlantcircBase osa_circ_025040
Alias NA
Organism Oryza sativa
Position chr4: 30081667-30083167  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os04g0596400
Parent gene annotation Similar to UPF0195 protein CG30152. (Os04t0596400-01)
Parent gene strand -
Alternative splicing Os04g0596400_circ_g.2 Os04g0596400_circ_g.3
Support reads 13
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0596400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCCTCTCTTTTTTCTCATAAACTACAGGGTTAGCATTTATTAACCCCACAACCATTTTTCTGA
TGCAATGCACTAATTTATATCAGAATGGCGAAATTCctgcagtttcagttgcatgtgatccagg
cgccacccttatgtccacctgcacaaattataaatgactaagctgccaaaaatttctgaagaaa
tatgaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAGTTTCAGTTGCATGTGATCCAGGCGCCACCCTTATGTCCACCTGCACAAATTATAAATG
ACTAAGCTGCCAAAAATTTCTGAAGAAATATGAATAGTAAACAGCAGGAAGACATAATTTCCTC
GTCATGTTAATGAACTAAAAAAAGAGAGAATTGTACTTTGGACCATCTTTTATTGCCAAAATTT
CACTTTGGACCACTCTTTGTCTAATCTTTTACTTTGGACCAGGTATTTTTTACTTTGTTGCACT
TTGGACCACCTCAACTCTCTTCCCTAGCCATGTCTGGCCTCTCCTCCAGCAAAGATATGAATCT
GCAAAGAGGTGGAGGAGTTCACCGGTGGGCTGGAATTGATGTGCTGAAGAAGTGGTTTAGGGTA
GTCCAAATTGCAACAAAGGTGAAAATACCTAGCCCAAAGTGAAAATGATGATCAAAGGGTGGTC
TAAAGTGAATCCATGGTAATAAAAAGTGGCCCAAACTGCAATTCACCAAAAAAAGGAGTAGTCT
TCGATTTGTTCATGGAATGTGCAAGACTGAATCACTAGGTATCAGTCTCCAGCTCGATCATGAA
ATGCCTTGGATGGTATCTTCACAACCTATCTGTGTTCCTAACCATAATGATTAAGTTTCACATA
CAACACAGGTTTCTGCACAATTAGAAACTTATTCTGCAGATATTTTGAGGTATACATTCAGGCA
TATGCCTAAATGAGTTCTGAAAAGTACCATGGAGCAAAATAAATGAAGAGCATGTGAAATATTT
TTTAAGGTAAAGGGAAAATAGTTGTTACCTAAATTACATGTCTGTCACAGTACTATAGGACTTT
CTAAATTGTATATGTCAGGCAATATATTAAGGGCTCATTCAGACTTCTTACGATTGCAAGCTAC
CATAGAGATGCTCCATGTATCATACCTTGTATCGAGGGGGAAGACTCCGCATAAGTTTCACACG
CAGGCAAAGTCCAATGACGGTCGCCATACTGCAACGCTCCACTGTTGGGGTAAAAGTAACCCTG
AAGAGAATAACAGTGAATTGTTGTGACTGAATTTCATTAACAACCCATTGTAGCATACAATGAT
AGAGAGACGTAAACTTACCTGACATGACTAAGTTCATCATTGATTTCAACTGAATCCTCAGTTA
CAACATTAAGCTCTTCGAGTGAGTATGGGTGCTCTGGATCCTTTATGTCTCTAATATGATGTAA
GAAGGTTAAGGAGTGCAAACAAAAGAAAAATTGAGGGCAGCAGAACTCCAGATAGAGGTAAGTA
TAACAGGAAAGAGAGGTACACAGCATGTAGATAAGGAAACAAAGAAAGGATATCAAATATTTCT
AGCTGGTCAATAGCCTCTGCCGCATTTTCATCTGTGGTTTCTGGTGCCTGCCGAGAACGCCTCT
CTTTTTTCTCATAAACTACAGGGTTAGCATTTATTAACCCCACAACCATTTTTCTGATGCAATG
CACTAATTTATATCAGAATGGCGAAATTC
Conservation Information
Conserved circRNAs NA
PMCS 0.345887722
Functional Information
Coding potential Y
Potential coding position 30083157-30082613(+)
30083132-30082778(+)
30083125-30083153(-)
Potential amino acid sequence MAKFLQFQLHVIQAPPLCPPCIEGEDSA*(+)
MQCTNLYQNGEIPAVSVACDPGATLMSTLYRGGRLRISFTRRQSPMTVAILQRSTVGVKVTLT*
(+)
MVVGLINANPVVYEKKERRSRQAPETTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEELNVVTE
DSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKVDIRVAPGSHATETAGIS
PF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017