Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0596400_circ_g.1 |
ID in PlantcircBase | osa_circ_025040 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 30081667-30083167 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | Os04g0596400 |
Parent gene annotation |
Similar to UPF0195 protein CG30152. (Os04t0596400-01) |
Parent gene strand | - |
Alternative splicing | Os04g0596400_circ_g.2 Os04g0596400_circ_g.3 |
Support reads | 13 |
Tissues | seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0596400-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.345887722 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30083157-30082613(+) 30083132-30082778(+) 30083125-30083153(-) |
Potential amino acid sequence |
MAKFLQFQLHVIQAPPLCPPCIEGEDSA*(+) MQCTNLYQNGEIPAVSVACDPGATLMSTLYRGGRLRISFTRRQSPMTVAILQRSTVGVKVTLT* (+) MVVGLINANPVVYEKKERRSRQAPETTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEELNVVTE DSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKVDIRVAPGSHATETAGIS PF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |