Detail information of Os03g0786700_circ_ig.2


General Information
CircRNA Name Os03g0786700_circ_ig.2
ID in PlantcircBase osa_circ_022174
Alias Os03circ29094/Os_ciR1239
Organism Oryza sativa
Position chr3: 32673684-32674220  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0786700_circ_ig.3 Os03g0786700_circ_ig.4 Os03g0786700_circ_ig.5 EPlOSAG00000003140_circ_ig.1
Support reads 6/15/8
Tissues leaf and panicle/root/shoot, root, seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGACATGGGGTTGAAGCTATTCCGCAAGCATCTTTCACTGTCTCCGGAGATTGAACACAAAAC
TGTTACTGGTCTTCTAAGATTAATTGAGAGTGAGAGgtcagccaaaattgccaacaaactttga
ggaggatacatgggctattttgaaagatgctattacagctatatttctaaaacagaaactttcg
tgcgatgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 155
Transcript exons: 32673684-32673794,32674177-32674220
GTCAGCCAAAATTGCCAACAAACTTTGAGGAGGATACATGGGCTATTTTGAAAGATGCTATTAC
AGCTATATTTCTAAAACAGAAACTTTCGTGCGATGTTGAAAAACTTTCACAAAACTGTTACTGG
TCTTCTAAGATTAATTGAGAGTGAGAG

Transcript length: 193
Transcript exons: 32673684-32673723,32674068-32674220
GTCAGCCAAAATTGCCAACAAACTTTGAGGAGGATACATGTTTACTTCTTGATGTAAAATATGT
CAAGAATGTTGCAAACATTTGTTCAGTGTGGGACATGGGGTTGAAGCTATTCCGCAAGCATCTT
TCACTGTCTCCGGAGATTGAACACAAAACTGTTACTGGTCTTCTAAGATTAATTGAGAGTGAGA
G

Genomic sequence GTCAGCCAAAATTGCCAACAAACTTTGAGGAGGATACATGGGCTATTTTGAAAGATGCTATTAC
AGCTATATTTCTAAAACAGAAACTTTCGTGCGATGTTGAAAAACTTTACCAGGTAATTTTTATA
TTGCTTCTATTCTATTTGATGATCCCACTTTAGTTATTTAGAACTTGTTTTCTTCACTATAGGC
TGCAGGTGACCTTTGTCTACACAAGCTAGGCGCAAATCTATACGAACGCATAAAGAAAGAATGT
GAAGTACACATATCGGCAAAAATATCAGCATTAGTGGGTCAAAGTCCAGATTTAGTAGTATTTT
TGTCTCTGGTGCAAAGAACATGGCAAGATTTTTGCGATCAGATGTTGATTATTCGTGGTATTGC
TTTACTTCTTGATGTAAAATATGTCAAGAATGTTGCAAACATTTGTTCAGTGTGGGACATGGGG
TTGAAGCTATTCCGCAAGCATCTTTCACTGTCTCCGGAGATTGAACACAAAACTGTTACTGGTC
TTCTAAGATTAATTGAGAGTGAGAG
Conservation Information
Conserved circRNAs osi_circ_005166* osi_circ_013733
PMCS 0.520731782
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA