Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G14580_circ_g.1 |
ID in PlantcircBase | ath_circ_002534 |
Alias | At_ciR2485, Ath_circ_FC0345 |
Organism | Arabidpsis thaliana |
Position | chr1: 4990042-4990880 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | AT1G14580 |
Parent gene annotation |
C2H2-like zinc finger protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 3 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G14580.3:2 AT1G14580.2:2 AT1G14580.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.591600793 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4990070-4990877(+) |
Potential amino acid sequence |
MSSSYNTIALSSTPTFLLSSAAAGPGPNNFNRQEAAMTMVQQQPTSSVAPPPKKRRNQPGNPNP DAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVRRKVYLCPEP SCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTI FSSFSKNRPAEKMSSSYNTIALSSTPTFLLSSAAAGPGPNNFNRQEAAMTMVQQQPTSSVAPPP KKRRNQPGNPNPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNK EVRRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTC GTKEYRCDCGTIFSSFSKNRPAEKMSSSYNTIALSSTPTFLLSSAAAGPGPNNFNRQEAAMTMV QQQPTSSVAPPPKKRRNQPGNPNPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGH NLPWKLKQKSNKEVRRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYA VQSDWKAHSKTCGTKEYRCDCGTIFSSFSKNRPAEKMSSSYNTIALSSTPTFLLSSAAAGPGPN NFNRQEAAMTMVQQQPTSSVAPPPKKRRNQPGNPNPDAEVIALSPKTIMATNRFLCEVCNKGFQ REQNLQLHRRGHNLPWKLKQKSNKEVRRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEK KWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFS(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chen et al., 2017a |