Detail information of BGIOSGA033078_circ_g.2


General Information
CircRNA Name BGIOSGA033078_circ_g.2
ID in PlantcircBase osi_circ_008465
Alias Chr10:18869264_18871201(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15375778-15377715  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033078
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033078_circ_g.1 BGIOSGA033078_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033078-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCGTGCTTCTGATTGGTTATTCATCATTTAGAAACCTTTCCCTTGGAAGGAGTGCGAGGGAC
AAAACTGTTGCAAACGAGATCACCAATGCTTTGCAGggtatcaggaataagatttatgtgggaa
aatgtgatccaatctgtcaagaaggtcaaatctggggataaaggttttggttgcattttggctc
acaacatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATCAGGAATAAGATTTATGTGGGAAAATGTGATCCAATCTGTCAAGAAGGTCAAATCTGGG
GATAAAGGTTTTGGTTGCATTTTGGCTCACAACATGGGCCTTGGGAAAACTTTTCAGGTTTGTA
CTGACTTTTGTCCTGTAATATATATTCTTGATTTCTTCATTACATGATTCAGCCATATTATCAT
ATTTTTTCCATGGTTATTAGATCATATTCTAGGATCTATCGATCTATTCTTTGGGTGTCAGTTT
ACCTTTAATTGTTGTACTTGTATTGCTGGATTTGTTAACTATAACTATGTGCCGATTGTTTTTC
GATCATTCAAGGTGGCCTTTGTTTTCCCTTTCCTGTTTCCATTTCACAAAAGAATAATGGAAAC
TGTATTCTTATATTTTTGCATTTTGACTTTGCAGGTTATTACATTCCTGTATACTGTTATGAGA
TGCATCCAGTTGGGACTGCGCACGGCGCTTATAGTTACCCCCGTTAATGTTTTGCATAACTGGA
AGAAAGAGTTCATCAAATGGTGTCCAGCAGAACTTAAGCCACTTCGTGTGTATATGTTGGAGGA
TGTTCCAAGGTGCAGGTTAATTATTTTGTTACTTATCTTGTCTTATGTTTGCAAGTATGCACTC
TGGAATTTATAATTAGACTATGAAACTCTTGCACATAGGTTTGAAGCAACTTAGCACAAAACTT
AGCTAACGGACAAGGAAAGATCTATTAGATCTGCCTATATCAATTAGGAAATCCAGACCTAAGT
TATTTCTAAAATCTAATGATACCCTCAATCGCTTGAATCATTCTTTGTAGACCTTGCTTTGGAT
CATCCATCAAATGCCGTCTTATGCGATACATGATACTCCCTCTGCCCCAAAATATAATTTGAAC
TAGAAAGGTAGCTATATTTTGGGATGGAGGGGGTACTAAATTTGTTCCCTAATTCATGTAACCT
AGAACCTTTGTTATACCATCTTGTATAATCTTATTTTCCCTACTGCAATACTAGATAATTGACA
CGTGCCAGCCTCAAAATAAATTATACCCTGTGAGCTATAAGGATAAACTCAAACTCTGCATCTG
TTAATCTGTTACTCTCAAACCTAAAAACATAAGTTAGCTAGCCACCCTAGGTTCAATTCCCCCA
AATCTCAAGAAAAAAACTGTTCATGTGTGTAGACTCCTTTGCAACATTTGGAAGGTTACTGGCA
TTACCCTTTATTTCTTCTCTAGATTTATGTCACAAATCTCACTTGGTTAGATGCGATTGATTTT
TCCTAATGCTGAAAACAGAAATATGAAACGACATATTCAGTATGGTATGATGTTGATAACCACT
AATGAAAGCTATGCTCCTGAAAATCTTCAATTTCACCTCAGCAGCATTAGGACATTGCTGTCGA
GCTTCTTTTTATTGCATTATTTGGTATTTCCCTTTTCATGACCTTGCATTAGATGTTTATTGCA
CTTGAAAGCTATTGTTCAGCACTTCAGAACCTTTGGCAGCATGTGAATTGCTTTAGCTTCAAGG
CATCTTTCTAAATGCAACGGAAGATGAAGGTTCCACCATGTCCTTGTACCGATAGGTTCAATTG
ATTACCTGCATAACCAACCTGTGGCTAGATGTATTAGTTAGGGTGAATATTCTTGTAAGCCCTT
TTCTGCTGATGATGGAATGTCTGCCTGTGTCAAAACTTCTATATGCTGTCGAAATAAGGTTTCA
TTACGATTATGATGGGGTGTTCTATTTTTGGCCTGAAACAACTCCCCTTCCACTTGTGGTTTTC
GCAGGGCAAACATTCAGTATTTACTAAAAAAGTGGCGAATAAAAGGTGGCGTGCTTCTGATTGG
TTATTCATCATTTAGAAACCTTTCCCTTGGAAGGAGTGCGAGGGACAAAACTGTTGCAAACGAG
ATCACCAATGCTTTGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021