Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009508_circ_g.3 |
ID in PlantcircBase | zma_circ_009620 |
Alias | Zm08circ00032, zma_circ_0002716, GRMZM2G156606_C2 |
Organism | Zea mays |
Position | chr8: 68051219-68051798 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d009508 |
Parent gene annotation |
DUF1639 family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d009508_circ_g.1 Zm00001d009508_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d009508_T001:2 Zm00001d009508_T002:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.167766755 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
68051503-68051278(+) 68051750-68051278(+) 68051395-68051571(-) |
Potential amino acid sequence |
MAMKGTKLPQRPKRRPKIIEKTVSAICPGVWLTDATRSRYEVREKKCPKKIGGGLCRCLCRCRG EVLGGC*(+) MRPGAGTRCARRSAPRRSAEDCAGACAGAGEKFLAVAEAAARAQKQRAVSPHKVGLGVPDPKQQ QNQWGSSGSGHQQQAGAAAGASSKPAAKLEVPRIYTTLSRKEKEEDFMAMKGTKLPQRPKRRPK IIEKTVSAICPGVWLTDATRSRYEVREKKCPKKIGGGLCRCLCRCRGEVLGGC*(+) MATAAAAPLVLLLLRVRDAQAHLMRRHRPLLLGPRRCLSNRQELLPGTGTGTGTVLRRSSWGTS SRAPRTCSWSHPSATPRDRSH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |