Detail information of Os01g0729100_circ_g.2


General Information
CircRNA Name Os01g0729100_circ_g.2
ID in PlantcircBase osa_circ_003762
Alias Os01circ22588
Organism Oryza sativa
Position chr1: 30400528-30405249  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os01g0729100
Parent gene annotation Protein of unknown function DUF92, transmembrane family protein.
(Os01t0729100-01);Similar to uncharacterized conserved membrane
protein. (Os01t0729100-02)
Parent gene strand +
Alternative splicing Os01g0729100_circ_g.1
Support reads 2
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os01t0729100-02:4
Os01t0729100-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACATTCTTATGTGGTCATGTGCAGCTCACCAATGATGTTGTCAATGTACTAAATATCTCAACT
GGTGGTATATTGGCTGTTCTGATGCAGCAGTTGCTAggcacagcagcaactaagttgaaaataa
agcagaaagaagctttgggggtggcggagaaaagaggaggaaggagagggactggaagtgttat
tggttcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCACAGCAGCAACTAAGTTGAAAATAAAGCAGAAAGAAGCTTTGGGGGTGGCGGAGAAAAGAG
GAGGAAGGAGAGGGACTGGAAGTGTTATTGGTTCCAGTGCTGCTGGTTGTGTCTGTGCTCTGCT
ATCAATCTACAATGTAGGCAGTGCAGCGTTGGCTGAGCTCTGGAGACTTGGCTTCGTTGCTAGT
TATTGTACTAAACTAAGTGACACAGTTTCCAGTGAAATAGGGAAGGCCTACGGAAGAACAACGT
AAGATTCCTGTCACTACACAGCCTTCAAATAATTCATGGTTCCACATCCATAAACTTGTGTATA
TATTTGTGCACTCTTAGTGAACTCAATGAACTGTACTTAGAGCTCAGTTTTGGTCTTTTTGTAG
AGTAGGTACCTGGTGACAACACTTAAGGTTGTTCCGCGAGGTACAGAAGGTGCGATCAGTATTG
AGGGTACTCTAGCTGGAATTCTTGCATCGATAATTCTTGCAAGTGTTGGTTATCTCCTGGGGCA
GGTAAATTATTTATACAGTAAACTTTGCAGAACAGCAGATATTTTGGAAAACCTACAGATTTAG
CACTGAATTGTCACAGAACTTATATGGAAATGACAGTGATCAGTGAATATATAGTCCTTACCGT
TTGCTCCAATACACTCGTATGATTATTGAAAAAAATAAAACCATGCATTTTATCGCAGGTTAAT
GTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAATTTTTGTGAGAGTTATATTG
GTGCCACACTACAAGATAAAGAAGGTTTTGAATGGGTGAGTTTCCACTTTCAGCTGATTAAGTA
CTCCTTTTAGAGTTTTCCATGTAAACTGAATTTGTCTTTTGTTTGTGTCCTAAATTTTCTTCTT
GTTGAAGACAGTACCTTGTTTCATTTCCTGAATTAGCTTGCATTTCAATGACGTAACATTGGAG
GCCTATAGGTTGAATGCTATGATGAAAATTTTCTAATAGGACCTTATTTCATGTATGCTTTAAC
TATACTAGACATTACCGCGCGCGTTGCACGCCCTATCAGCTGGCTAAAGAATCACAAAGAAAAA
GCTCTTGGAACCATCATATTGTTAACCTCAATTCACACCATCATGTTCTCGTCCCCGTCGACAA
TCTTCAGAGCACTCCTCACGATGTCTTCAGGGAAGCCCATTTAAAGTTTTAAACCAACTTATGC
ACATGTCGTCACAGTCACAGATAAGTTGTACTCCGTATATCCAATGGAATAACAAATACTCCGT
ATAACTCGGTAACAATACATTTTCTTCCATACCGACGGAGGTACTCTGCAAAGGCCTCTATCCA
GTAGCAGAAAATATGGAATAGTCACGCAGGTACTGCAAAAATGGATTAAAACAAACATTAAGAG
CAGAACACAACCTCAACACTGATTCCTTAAAACTTGTTAATTAGTTTTGACCATGTCTCGAGGT
TAGGAATTTCTGAATTTCTGATTCTGAATTTATGACTGGAATTTCTGAATTTTTTATTCTGAAT
TTCTTATACTCTGCATCGCTTTAGTCACGGGACAGAACTCAATGATTTACTCACCGGGGCCCAT
TAATTATACAGCCAAGATAAGGTGTAGTTCAGATTCCGAACTCTGGACCTAGATTGAATAACCA
AGTGACTTTACCAATATAAAGGTACACTAAAACCTAAGTTGGCTCTCTCTGATCCAATACCTTC
AAGAAGAAATGAAAAAAGAAAAGGAAAAAAGGCAATGGAAATATAAAACATGTAGAGTATAGCA
TGTGCAAACACATCTCTAAATTCTAGTATCATCAATGGTCCTTACCCAGCTCCAAGTGCCATCA
TTGGTCCACACTAGCTCTAGCCACCATGTTTTCATCTCTACCTTTTCCCAGCAATTTGAGAAGC
TATGAAACAAACAGCTAGAGCTGCAAAATTTCTCCATTACAAAGCTTACCAGAGCCCCGACCAA
TTTTATATCTTCAATCTCACCTGCAAGAGCACCAACCAGTTTTCAGTCTTCAGTCTCCATTCAC
TGAGCATGAAGGAAAGCATGGAGATAATGACTACATGAATACACCGTGATGGATCCTCTATCAT
GCAACAAATGACCAGATCCAGTGTGGTCATCAGAAGAATGCAACAACGTCGACAAGACTTCTTG
AACCAGATACACTGCTAGCCATTGCAGCCACAAACCGTAAGAGGCAGGGTAAAGAAAAAAGTGC
ATTCTTCTGAGACCAAACTGCCTCTTACTCCCTTCTTTTCCCCTTCCTCTTACAAGTCAAATTA
AATGTTCACATGATAGAAAAGAAAAAAAAGGAGTACTTTGCCAGCACAAAGTGCATTCTTTTAG
GCCTTAGCCAAAAGTCAAGTGAGCAGCCAGCTATATATGCAAAGTAGCAAATTAGTGACAAATC
AACAGAAAACAAATCTTAAACCAAAGAAACAAATGTAACTGCATCCACCAACATATCCTCCATT
GTCATTCATCGTGCTGAAAAGAATTTCATTAGGATCAAAATCTATTCGAATCTTGTTGGTTGGT
TTGTGCTCTCATCAATTGGGTTTGTAAAGTAGTTAAACAATGTTGTTTTCTTCTCTCTTGCAAG
TTTATCAGTAAATAAAAAACTATTAAATAGAAGGCTCTGTTTCTCATTCAAAAGATAAATAGAT
TAGAGTCCAGAGTCTACCTAAATGCTACAGAGAAATAGGGAATGCTCACTTATTAGTGCCATTA
GCTGATTAGAAATAGCATGTGAGCACTTGAGTAGAGTAGCAGTAGCAGTAGCAGACCAGGACGC
GACCATGCGCCCGTGCACTGGGCTGTTGCTAGCTGCTGCTGCGCCCGCACGCTGCGCGTCGACG
CTGCCTCCGCGCGTCCCCACCGGCGACCTGCTGCCTTGCGCATGCTGCGACTGCGCCAGCTGCT
GCACCGCCGCTGCGCACCCGCGTCCGGCCTGCTGCAAGCCACCACTCCAAGCCAAACCCTAGCC
ACCGCCAGATCTGAAGGTGGTGCATCCTCGGGTCGGGGCAGCGACGCTGCGACGGAGTGGGAGA
GGGGCGATGAGACAGCGGGAAGCAGAGGATGGCGTGTTGTGGTGTGGGAGAGATCATCGCCGAC
GAGGAGAAGCAAGCCAGGTGGAGGGAAAGACGCGGCTGTCGCCCGTCGCAAGGAAAGAGGAGAG
AGCGAGAGAAGGAGAGGGGAAAGGTAGGGAACAGTGGCAGCTAGGGTTTCGGGTGGGGTGGGGT
GGGTAGGGATTTTTGTTTTTTCAGAAAAACCCCTCACTTTTCGTTTATCAGAGCGCAGCCCTAT
TTTCCCATTTTTTCCTTCTTCGTATAATATATAGTAGGTTGTGGAGGGCTTTTACATAAGAATA
CAGAACATAGAAACATATAGTGAGGGATCTATTACAAATTATATATAAAACCAAGGTCTTTTTT
GAAAAATTTCCAGCTCGAAAAACCTCTCCGCCTTCCAGCGCGCGGGGCGACGTGGATAGCGCGG
CGATCGAACACGTGACTCCAAATCGTTGTGGGAGGTTCAATTGGGGGCAGGTTTTAATATAACC
GATTCATGTCCTCCATGCTCATCTTTCTCTGTTCTCTATCGTGTATCACTAGATCATTTACAGC
ATAAATGAGTGATGGACGTTTTCATTATATGGGACCATGCAACTGTCACCATGTGATTTCTGTC
TGTTAGAGCACCCGCAATGGTAAAGTAAGTTGCTCTCTATAAAACATGTACATCTCAGCAATAG
ACTAGATTAATAGTAAATCACCTTAATATTATGTCTACATCGGTATCTATAGCTCTCTAATGCA
TTGCCTCGTTTTTCTCTATAGACTATCTCCAGGTTAGTAGATAGTTTTGCTCTCTCTCTTCATT
TAATATCTTCCAAGTAAGAAAATATGTTGACATGGATCTCTTGTAGAGAGCCTATAGATAACCA
TTGCGGGTGCCCTTAGTCTACTTATTATATCTACATAGTGGTGGGTAATTTTTTTTCACCTTTT
CAGCACATGCCATAACAGATATGCCATTATGTCGTTCTTTTTTCTAATCTGTGGGTATTGATAT
TTTCTTAGAGAAGTGTATTTTTTAGCTGGCCTCTACATCCAACCAAATATATGTAGTATTTTTA
AATTGGGAACTTAGTCCATCAAACAAACCAATATGAAATTTGCTCCTATGGAGATTTGAACTCA
TGATCTTGGGGTGCTACTCAGGTTACTGCAACCACTAGACTACGTGACCTTCCGCTAAAGAATA
AACATTGATGCTTCTTGTTGACAAGTAGATGGCAGAATTCGCTAATTTTATATCCTTGGCTCAT
TGAGAAAAAGGGCATCAGAATAGAAATTAACTCCAGCAGCATCCAAGACACTGAACATCACTAT
TGACTTTTGTTTTTAGACATGCAGTAGTCTGGGGACATTTCACTTATTAGAATTCTTTCCAATC
TTTTTCACCTGAATAATACCAGGAAACCTGTCTTTACAGTGGTGTATAATAAGCTGATATTTGG
TTTGACCTGTAGGGTTCACAAAAAAAAAAGAAGCTACTATGTACTTTACTTTGTATATAGAGAA
GTTTTCCCACAACTAACATTCTTATGTGGTCATGTGCAGCTCACCAATGATGTTGTCAATGTAC
TAAATATCTCAACTGGTGGTATATTGGCTGTTCTGATGCAGCAGTTGCTA
Conservation Information
Conserved circRNAs NA
PMCS 0.316257062
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015