Plant Circular RNA Database

Detail information of BGIOSGA029962_circ_g.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA029962_circ_g.1
					
						ID in PlantcircBase
						osi_circ_008010
					
						Alias
						9:8746463|8747991
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr9: 8746463-8747991  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA029962						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							BGIOSGA029962_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA029962-TA:5

General Information
CircRNA Name	BGIOSGA029962_circ_g.1
ID in PlantcircBase	osi_circ_008010
Alias	9:8746463\|8747991
Organism	Oryza sativa ssp. indica
Position	chr9: 8746463-8747991 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA029962
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	BGIOSGA029962_circ_g.2
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA029962-TA:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCCTTTGTTCTGTTGATAATCCACTAACGCCAGGCAATCCAACCAAGGAGTCTCTTAAGGGGGA
AAGCTCCACAAGTTCCATGACCTCATCAATAAACATctgtcccaaggcgtatggcaaaggtgaa
tacatgtgagctgctcgttccctgtagaacacagtgcgttcaacagacacaactggctgaacgg
aagaagaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGTCCCAAGGCGTATGGCAAAGGTGAATACATGTGAGCTGCTCGTTCCCTGTAGAACACAGTG
CGTTCAACAGACACAACTGGCTGAACGGAAGAAGAATTCTGCACTCCCATAAATAAAACTGACG
CATACATGGAGCCCATGGCATTGAACAAGTCCTGTTGATTGCTCCTGCAAGAGTGGAGTATCCT
CAGTGAATTGTGACAGATATAATCTCAAGGTAGCCTCTCTAAATCAGTGGAAAATGTTGCATAT
ACATTTTTACTTGTTTTTATTGACCGTATACCTTTTTCTGCCAACACCCCAGAACATTGTTCCA
AACAACAGTGCAATTACAATGGTGTAGAAGTATTTGACAGCAGTATATGGAGGGTTTCTCCAGT
AGGACAGACTTTGCTTCCATAGGCAAGCCAAACATTGTGTGATGAAAGTTTGAGAGTATTCTGT
TGGAAAGGATAGGTCACTTGAACCATCAGGAGGTGAGCTTAGCTCCTTTATCATACTTTTATTC
CTCCTGTAATGCAAAAGAGACTATAATATTATTGAACTGTTAACATTGACTCGTTTAGATGCTT
TTGAACATAAATTGCTACAGTAATAATCATGTTACACATATAGTGGCAGTTTGAAGCATTTGTG
ATGGGCCATTCATGATTTGAGCTTCATTTATAGTCCATATTTTTTTCACAAACAGGCTCATCTT
TTCCATTTAGTGACTTACCCTCTTGAAAATAGTTAAGACACACTGAACATGATACTGATCGTTG
CTGCCTTAATTTTCCAATATAAAATTGCGGAGCTTAAAATTTGCATGGTCTATAGTCAAAATTA
TCAACCATATGGCAACCAGGTACTTACCTGTACAGTTCAGAATTCTTGTATATTTCACTGAAGT
TAACCCCAGTTATCTGTTCCTGTACAGTACTAGTCACTTCCAGCATCCATGTTGATGGATTGTA
GCCATGTTTTATTTTGCTGACACCTTCAATAGACTTTAGAAAATGAAAGCAGCTCAATTACATG
TTTTTAGAGCAAAAAGTCAAATTGATGGTAACATATATAATTTTTTTACCTCAAAATATCTGAT
CAATTCACACGAGTGCTGACCTACTGGACCTACATAAATCTCCTCACCTCCTCGTTTCATCAGG
AATAGCTGCAAAGATAGTATAAGTATGTATTGAAAGAGTGCATCTTAAATCCATGTGACAAAAG
AAGTGGGTATGATTTCTATCACCTCATCAAAAGATTCAAATATGTCAATGCTTGGTTGGTGAAT
TGTGCAAACAACTGTTCTTCCTGTGTCCACAGTATTTCTTATTGCCCTCATGACAATGGCTGCT
GCTCGTGCATCAAGTCCAGATGTTGGTTCATCCATGAATATGATAGATGGGTTAGCAACTAGCT
CCACTGCTATTGTTAGCCTTTTCCTTTGTTCTGTTGATAATCCACTAACGCCAGGCAATCCAAC
CAAGGAGTCTCTTAAGGGGGAAAGCTCCACAAGTTCCATGACCTCATCAATAAACAT
						
					

			
		

Sequences
Splice junction sequence	TCCTTTGTTCTGTTGATAATCCACTAACGCCAGGCAATCCAACCAAGGAGTCTCTTAAGGGGGA AAGCTCCACAAGTTCCATGACCTCATCAATAAACATctgtcccaaggcgtatggcaaaggtgaa tacatgtgagctgctcgttccctgtagaacacagtgcgttcaacagacacaactggctgaacgg aagaagaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGTCCCAAGGCGTATGGCAAAGGTGAATACATGTGAGCTGCTCGTTCCCTGTAGAACACAGTG CGTTCAACAGACACAACTGGCTGAACGGAAGAAGAATTCTGCACTCCCATAAATAAAACTGACG CATACATGGAGCCCATGGCATTGAACAAGTCCTGTTGATTGCTCCTGCAAGAGTGGAGTATCCT CAGTGAATTGTGACAGATATAATCTCAAGGTAGCCTCTCTAAATCAGTGGAAAATGTTGCATAT ACATTTTTACTTGTTTTTATTGACCGTATACCTTTTTCTGCCAACACCCCAGAACATTGTTCCA AACAACAGTGCAATTACAATGGTGTAGAAGTATTTGACAGCAGTATATGGAGGGTTTCTCCAGT AGGACAGACTTTGCTTCCATAGGCAAGCCAAACATTGTGTGATGAAAGTTTGAGAGTATTCTGT TGGAAAGGATAGGTCACTTGAACCATCAGGAGGTGAGCTTAGCTCCTTTATCATACTTTTATTC CTCCTGTAATGCAAAAGAGACTATAATATTATTGAACTGTTAACATTGACTCGTTTAGATGCTT TTGAACATAAATTGCTACAGTAATAATCATGTTACACATATAGTGGCAGTTTGAAGCATTTGTG ATGGGCCATTCATGATTTGAGCTTCATTTATAGTCCATATTTTTTTCACAAACAGGCTCATCTT TTCCATTTAGTGACTTACCCTCTTGAAAATAGTTAAGACACACTGAACATGATACTGATCGTTG CTGCCTTAATTTTCCAATATAAAATTGCGGAGCTTAAAATTTGCATGGTCTATAGTCAAAATTA TCAACCATATGGCAACCAGGTACTTACCTGTACAGTTCAGAATTCTTGTATATTTCACTGAAGT TAACCCCAGTTATCTGTTCCTGTACAGTACTAGTCACTTCCAGCATCCATGTTGATGGATTGTA GCCATGTTTTATTTTGCTGACACCTTCAATAGACTTTAGAAAATGAAAGCAGCTCAATTACATG TTTTTAGAGCAAAAAGTCAAATTGATGGTAACATATATAATTTTTTTACCTCAAAATATCTGAT CAATTCACACGAGTGCTGACCTACTGGACCTACATAAATCTCCTCACCTCCTCGTTTCATCAGG AATAGCTGCAAAGATAGTATAAGTATGTATTGAAAGAGTGCATCTTAAATCCATGTGACAAAAG AAGTGGGTATGATTTCTATCACCTCATCAAAAGATTCAAATATGTCAATGCTTGGTTGGTGAAT TGTGCAAACAACTGTTCTTCCTGTGTCCACAGTATTTCTTATTGCCCTCATGACAATGGCTGCT GCTCGTGCATCAAGTCCAGATGTTGGTTCATCCATGAATATGATAGATGGGTTAGCAACTAGCT CCACTGCTATTGTTAGCCTTTTCCTTTGTTCTGTTGATAATCCACTAACGCCAGGCAATCCAAC CAAGGAGTCTCTTAAGGGGGAAAGCTCCACAAGTTCCATGACCTCATCAATAAACAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							8747993-8746465(-)
8746613-8747948(-)
8747793-8746496(+)
						
					

						Potential amino acid sequence
						
							MFIDEVMELVELSPLRDSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
IVMRAIRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGEEIYVGPVGQHSCELIRYFESIE
GVSKIKHGYNPSTWMLEVTSTVQEQITGVNFSEIYKNSELYRRNKSMIKELSSPPDGSSDLSFP
TEYSQTFITQCLACLWKQSLSYWRNPPYTAVKYFYTIVIALLFGTMFWGVGRKRSNQQDLFNAM
GSMYASVLFMGVQNSSSVQPVVSVERTVFYRERAAHMYSPLPYALGQMFIDEVMELVELSPLRD
SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAIRNTVDTGRTVV
CTIHQPSIDIFESFDELFLMKRGGEEIYVGPVGQHSCELIRYFESIEGVSKIKHGYNPSTWMLE
VTSTVQEQITGVNFSEIYKNSELYRRNKSMIKELSSPPDGSSDLSFPTEYSQTFITQCLACLWK
QSLSYWRNPPYTAVKYFYTIVIALLFGTMFWGVGRKRSNQQDLFNAMGSMYASVLFMGVQNSSS
VQPVVSVERTVFYRERAAHMYSPLPYALGQMFIDEVMELVELSPLRDSLVGLPGVSGLSTEQRK
RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAIRNTVDTGRTVVCTIHQPSIDIFESFDEL
FLMKRGGEEIYVGPVGQHSCELIRYFESIEGVSKIKHGYNPSTWMLEVTSTVQEQITGVNFSEI
YKNSELYRRNKSMIKELSSPPDGSSDLSFPTEYSQTFITQCLACLWKQSLSYWRNPPYTAVKYF
YTIVIALLFGTMFWGVGRKRSNQQDLFNAMGSMYASVLFMGVQNSSSVQPVVSVERTVFYRERA
AHMYSPLPYALGQMFIDEVMELVELSPLRDSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM
DEPTSGLDARAAAIVMRAIRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGEEIYVGPVGQ
HSCELIRYFESIEGVSKIKHGYNPSTWMLEVTSTVQEQITGVNFSEIYKNSELYRRNKSMIKEL
SSPPDGSSDLSFPTEYSQTFITQCLACLWKQSLSYWRNPPYTAVKYFYTIVIALLFGTMFWGVG
RKRSNQQDLFNAMGSMYASVLFMGVQNSSSVQPVVSVERTVFYRERAAHMYSPLPYALGQ(-)
MPWAPCMRQFYLWECRILLPFSQLCLLNALCSTGNEQLTCIHLCHTPWDRCLLMRSWNLWSFPP
*(-)
MTMAAARASSPDVGSSMNMIDGLATSSTAIVSLFLCSVDNPLTPGNPTKESLKGESSTSSMTSS
INICPKAYGKGEYM*(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	8747993-8746465(-) 8746613-8747948(-) 8747793-8746496(+)
Potential amino acid sequence	MFIDEVMELVELSPLRDSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA IVMRAIRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGEEIYVGPVGQHSCELIRYFESIE GVSKIKHGYNPSTWMLEVTSTVQEQITGVNFSEIYKNSELYRRNKSMIKELSSPPDGSSDLSFP TEYSQTFITQCLACLWKQSLSYWRNPPYTAVKYFYTIVIALLFGTMFWGVGRKRSNQQDLFNAM GSMYASVLFMGVQNSSSVQPVVSVERTVFYRERAAHMYSPLPYALGQMFIDEVMELVELSPLRD SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAIRNTVDTGRTVV CTIHQPSIDIFESFDELFLMKRGGEEIYVGPVGQHSCELIRYFESIEGVSKIKHGYNPSTWMLE VTSTVQEQITGVNFSEIYKNSELYRRNKSMIKELSSPPDGSSDLSFPTEYSQTFITQCLACLWK QSLSYWRNPPYTAVKYFYTIVIALLFGTMFWGVGRKRSNQQDLFNAMGSMYASVLFMGVQNSSS VQPVVSVERTVFYRERAAHMYSPLPYALGQMFIDEVMELVELSPLRDSLVGLPGVSGLSTEQRK RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAIRNTVDTGRTVVCTIHQPSIDIFESFDEL FLMKRGGEEIYVGPVGQHSCELIRYFESIEGVSKIKHGYNPSTWMLEVTSTVQEQITGVNFSEI YKNSELYRRNKSMIKELSSPPDGSSDLSFPTEYSQTFITQCLACLWKQSLSYWRNPPYTAVKYF YTIVIALLFGTMFWGVGRKRSNQQDLFNAMGSMYASVLFMGVQNSSSVQPVVSVERTVFYRERA AHMYSPLPYALGQMFIDEVMELVELSPLRDSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM DEPTSGLDARAAAIVMRAIRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGEEIYVGPVGQ HSCELIRYFESIEGVSKIKHGYNPSTWMLEVTSTVQEQITGVNFSEIYKNSELYRRNKSMIKEL SSPPDGSSDLSFPTEYSQTFITQCLACLWKQSLSYWRNPPYTAVKYFYTIVIALLFGTMFWGVG RKRSNQQDLFNAMGSMYASVLFMGVQNSSSVQPVVSVERTVFYRERAAHMYSPLPYALGQ(-) MPWAPCMRQFYLWECRILLPFSQLCLLNALCSTGNEQLTCIHLCHTPWDRCLLMRSWNLWSFPP (-) MTMAAARASSPDVGSSMNMIDGLATSSTAIVSLFLCSVDNPLTPGNPTKESLKGESSTSSMTSS INICPKAYGKGEYM(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA029962_circ_g.1

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