Detail information of AT2G06050_circ_g.2


General Information
CircRNA Name AT2G06050_circ_g.2
ID in PlantcircBase ath_circ_012960
Alias Ath_circ_FC1173, Ath_circ_FC1174, AT2G06050_C1
Organism Arabidpsis thaliana
Position chr2: 2360148-2361983  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, CIRI2
Parent gene AT2G06050
Parent gene annotation 12-oxophytodienoate reductase 3
Parent gene strand -
Alternative splicing AT2G06050_circ_g.3 AT2G06050_circ_g.4
Support reads 1
Tissues whole_plant, leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G06050.3:3
AT2G06050.1:3
AT2G06050.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGAAACTCACCGATGAGAGAGATCGAATCTTCCCATCTTGTAAGAAGAAAACAGAGTCTCGTT
AGAGTTCCCTTGTGCCGCCGTCATGTCTCCGCCGATctgcatgagaagcacgtccaacatgcca
taattgacaaaagatgaaacctcccttagcgtgaactgcttccacaacttgcttccatgcttct
acttgttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 361
Transcript exons: 2360148-2360278,2361678-2361818,2361895-2361983
CTGCATGAGAAGCACGTCCAACATGCCATAATTGACAAAAGATGAAACCTCCCTTAGCGTGAAC
TGCTTCCACAACTTGCTTCCATGCTTCTACTTGTTCATCTGAATAGATTCCAGGCACATGTGGG
AACCCTGCGGATCCGGGAGAGACCATGGTGCCTTCGGAGATGAGAAAACCGCCGGGAGTGGTCC
GTTGAGCATAATACTCTGCCAACGCCGCGTTTGGTACTCCGTTCAACGCCCTGCACCGCGTCAT
CGGCGCCAGAACCACTCGATGAGAGAGATCGAATCTTCCCATCTTGTAAGAAGAAAACAGAGTC
TCGTTAGAGTTCCCTTGTGCCGCCGTCATGTCTCCGCCGAT

Genomic sequence CTGCATGAGAAGCACGTCCAACATGCCATAATTGACAAAAGATGAAACCTCCCTTAGCGTGAAC
TGCTTCCACAACTTGCTTCCATGCTTCTACTTGTTCATCTGAATAGATTCCAGGCACATGTGGG
AACCTGCAAAACTTTCTTTATATTAGTTTCACTCCTTACAACAACATTACAAGACTTGTAAAGA
ATATTCATTACAAGTCTTTCTTTATTTCATGATTCTTTTTATTTGCCTTTTCTTTGAATGTGGC
TGATAAAATCTAAACCTCTCTATTCTTATCACGCCACTAAACTATTATTGGTGGGTCCTGTCAC
CCACATTCCTTATAATGACAAGACAAAACAACTCAAAATGCAGTCGATTCTTTTTAGTGAAACA
ATGATAAATCGGATCCTTTAAACTTTCTCCGGTATGTCAAAAAAAAAAAAAAAACTTTTAAAGT
GAGATAAGCAAAAACCATATTTCTATTAAATTTAGTCACCATAAATCATTTCTAATTCAAAACT
ATTTTATACTTTCTCTATTCCTTTTTGTTTGATTGTTTAGAAAAAACACATATATTAAGATAAA
TATATTAAAGTTGATTTTAATTGTATTATTTTTGTGTTTTAAAATTTCCTATAACTTTAAACCA
ATGGTATTCAATCATTTTTATTAAAGTTTACAACTCATCAATAATAACTAATAAATATTGCATA
AAAAACCTTAAAAATTAATTTTTTTGAAACAATTTTTTTTCAATCTTTTTGAAACAAATTTTTT
TTCTAGAAAATCAAAAAAAAAAGAACAGATGGAGTATATCTTAAAGAGATTCCTTTTATTTTAA
ATGTAGAATGTCTAACCTAATAATCAACCTTTATTTAATAAAAGACTAATAGGGCAGTAATAAT
ACATATACTGTTTTTACATTGTTCTTTTCAATTCTAATACTAACAATAGTAGAGACACACACAG
TCACACAAAAAAAACTAATAAAAGACTAATAGTAGGTTTCTTATTGTTCTTAAGCAACATGGCC
GGCTCAAATATTGGCGAGACCTGGTGCCACACCAGACCCAAAAAAATTAAGTGTCCTTGAATAA
AAAAAAAAAATTTGGTCTATTATTATCATTGAAATAAATATTGTTAATTTGTTTTCAAAATTTG
TGGTTTTTAGTTATAGAAATGTTATTTAAAAAAACTTAGATCTTTCACATAGTTTTTTATAACT
AAAGTGGAGTTTTTAAGATATATATTTTAAATTAGTGGCTATTTTATTTTTTTTGTATGAAAAA
AAATAATAAAAAAAATTGGACCCTTGGACAGAACATCTAAGCCGCAATAATACTAATTTGATAA
AACCAAAATTATGTATAAATAATAGTACTAATATGAGTTGATTTGATATTTTAATGAAAATCAG
ATTGTTTTCCTAACGACAAAAGCCGTTTATTAAACAGTACAGTTAGTTGACGTCATCTCATCGT
AGTTTTTACTTTTGGTCTTAAAAAAGAAAGAAAGAAGTAAGTAAAATGACGAGAATACCCTGCG
GATCCGGGAGAGACCATGGTGCCTTCGGAGATGAGAAAACCGCCGGGAGTGGTCCGTTGAGCAT
AATACTCTGCCAACGCCGCGTTTGGTACTCCGTTCAACGCCCTGCACCGCGTCATCGGCGCCAG
AACCACTCTGAAAACGCAAACGCGATATGAGACTACACGTCATACAAAAACCACTCAAGATCAT
TAATCTAGCTGAAACTCACCGATGAGAGAGATCGAATCTTCCCATCTTGTAAGAAGAAAACAGA
GTCTCGTTAGAGTTCCCTTGTGCCGCCGTCATGTCTCCGCCGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.174200649
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress