Detail information of Os01g0588900_circ_g.12


General Information
CircRNA Name Os01g0588900_circ_g.12
ID in PlantcircBase osa_circ_002395
Alias NA
Organism Oryza sativa
Position chr1: 22958107-22958232  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0588900
Parent gene annotation Cytokinin-activating enzyme, Bioactive cytokinin synthesis (Os01
t0588900-01);Similar to carboxy-lyase. (Os01t0588900-02)
Parent gene strand -
Alternative splicing Os01g0588900_circ_g.4 Os01g0588900_circ_g.5 Os01g0588900_circ_g.6 Os01g0588900_circ_g.7 Os01g0588900_circ_g.8 Os01g0588900_circ_g.9 Os01g0588900_circ_g.10 Os01g0588900_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CC-CC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCACCTGGCAAGCAACCAGAGAAAGATAGAGAGAGAGAGAGATGGACAAATGGATCACTCACc
ccaatctggcgatcaaaagctgccgtttttatcatcccagcgacgcatgcattctcacacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCAATCTGGCGATCAAAAGCTGCCGTTTTTATCATCCCAGCGACGCATGCATTCTCACACATC
TCACCTGGCAAGCAACCAGAGAAAGATAGAGAGAGAGAGAGATGGACAAATGGATCACTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.412855291
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017