Detail information of BGIOSGA008907_circ_igg.1


General Information
CircRNA Name BGIOSGA008907_circ_igg.1
ID in PlantcircBase osi_circ_012192
Alias Chr02:30182335_30187051(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 31317671-31322088  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA008907_circ_igg.2 BGIOSGA008907_circ_igg.3 BGIOSGA008907_circ_g.1 BGIOSGA008907_circ_igg.2 BGIOSGA008907_circ_igg.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGATCTTTACTGAGCAGACAGTGCAGTGAGAGTGTGACACTGAACAGCGTTGTAGTGCTCATT
GGGCAAAGCTTTTGCATTCTGGCTTGTGCGGTGCAGtgggggtttcagcatttttagcaatctt
caaagtacaactccaacagtgatggcatctatacaggagtgcatttcctgggtattatttttgt
tatcattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGGGGTTTCAGCATTTTTAGCAATCTTCAAAGTACAACTCCAACAGTGATGGCATCTATACAG
GAGTGCATTTCCTGGGTATTATTTTTGTTATCATTTATATGCTTGTCAGCAAGCAATATTTTTG
TTTTGCTTAAACATGGATATCGATTTGCGCAAATGTCATGTTCTTCAAGTTCATATTATCGCAT
CTTGTTTTTAAGTGTGCAATTAAGCATATGCAATGATGGAAACATTTATCATCGTTTTTCAGTT
GGGAAGACTGTTTCAAATGCTTGAAGCTGTTGGTACACGGGTTGAGAAGGAAGAATTGTTATTG
AAGTGCAAAAATCATGAGCTAAATGCTGTTGGTGCTGACGAGTGGTCTCCTCTTGCAAGGAAAT
TGTTAAAAGTTCTTCCTTATTTGCTTACTCCTAGTCAATTGAATGCTGTTAAAGAGATTATATG
GGATCTCAGAAGACCAGTTCCTATGAACAGACTCTTACAAGTAACTATTAATTGCACATTTCTT
GGTTCATTAACTTTCTTGCTCTTGTTTCTGGAGTCTGGACTTGTTTACCGGTCAGTTGCTTGAT
GCTCCTCTGTAATCAACTCTAGTATATCTTGGCTCTAATATCACTGGTCTACTATTGCGTTGTT
TTATTTTGGCCAGTTTATTTCAAATGTTTCGATCTTAAGCAAAAATATTTGAACCAAACTATTT
TCTACCATTCTTAAGCACCAAGTTCGTGGACAAGAAACTTGCAATTGACTGGATGTAGCATTCC
ATTTTTCTTGGGGAAATGGAACATGGGGGTATACCTCATATGGGGGAAGAAAATCTTAAGTACC
AAGTTACAGGTTCTGGCTGTGGTATTACATAGTGAATTAATGATTCTGTTTTCCTTTTTATATA
TAATTGGTGTTCTTCAAATAACAACTATTGGGGCTTATATGCATCTTGCTGAAGACAGGAAAGC
CTTCTTTCTTTGACAGGGTGATGTTGGTTGTGGTAAAACCGTAGTTGCTTTCCTTGCATGCATG
GAGGTCATTAGCTCAGGATTTCAGGTATCTATACTACAAACCAACATCCTTGCCTTATGTACTG
TATATAAAAGGATTTTATCAACTAAAAGGACAGCTTACTGAAGCAAACTAGATGCTTAATCCAA
ATAGGATATACACGAAAAATGATTATCTTCCTCCTAGTGGTACTCTTCAGTTCTTCATTAATGA
GATGTTAGTCTAACATATACCTTGTAAAATTATTTCTAGGCTGCTTTCATGGTTCCAACGGAGG
TTCTTGCCCTCCAGCATTATGAACATCTAACTTCATTGCTGGAGAAGTTTGATGGAGATGAATG
CAAACCAAACATTGCTTTACTAACTGGTTCAACTTCCACGAGGGAATCAAGGATTATTCGAAAT
GCAAGCATTCTTTCTAGACTCTCAAGTTCCCATACGCATAGATTCATATATTTATGTGTTATTG
TTATTCTATGGCAGGGTCTCAAGACAGGAGAAATAGCAATGGTCATTGGAACACACAGCTTAAT
TGGTGATAAAACCGAATTCTCAGCTTTGCGCATCTCTGTTATAGATGAGCAGCAGCGCTTTGGT
GTTGTTCAAAGAGGAAGGTTTAATAGTAAGGTAATTTGCTGAGCATTTGCTATTTACATTGAAT
AAAAACCATACACGTCCTTTTTGACTGTTACTTTTTTTGCGGGGACTTTTTGACTGTTACTTTG
CTCCTGCATTGTCACTCATTCTGTAAACCTTGTTGTTGAATAAAATCACACACATCCTTCGTTT
ACTTACTTTGCTCCAGGATTGTCGCCCATTCTGTAAACTTTGTTGGCAAACTTAGAAAGAAAAT
TGCTAATTACTACTCCTTCCATCCTAAAACATAGCAGCTTTTAGTGTTCAAAATTTGTCCCAAA
ACATAGCAACTTCTCCATGTACTTCATCATCTGAACCAATCACAACCATCTCTCATTTAATTTC
TCCACCTACTTCCTCATCAAAACCAATCCTAACCATCTCTCATTTAATTTCACCTCTCTCCTTA
ATCTCCATGAAAAACTCTAGAAGTGCTTATATTTTGGGGCTTAGGGAGTAAGAAGTATGCCTCT
GGATTTCCATGTTCGTGTATCTTATTTTGTGGAAAGATGGGCCAGAGCGTTCCTACTGACTTTT
TTCTTCTTTCTGTTCTTACAAACTAGCATATCACTGCAGAAAATGACCCATCATTACAATTTGC
TATTCTTGCTGTTATTACAATAGCTAGCATATCATTGCAGAAAATGATGGTAATAACGGGTTAA
TGATAATTTTATTTAATAAAAATCCCAATTCAACGGGTAATATGCTAGTGATTATATAAAATGC
TATGGTGAAAGCCTTCAAGGAGCGTGCTGTAGTTCTCAAGGCTGCCTAATTGTCCAAAACAAAA
GATAATGTATCTGGTACTTACACTTGAGTATTTGATATCCAAACCTCGTTGCATAATTCATGTC
TTTCTTATTTTGGTTTCAAATTTAACATAGTTAACATTTGTTTGTTAATACAAATTACTACCAT
TCATTACAGCTATATACCCCTTCCACGAAATCGAGTGATGATGATACAATCTCAGACGAGAATT
CTGCTTCTGAAATATTTATGGCTCCCCATGTTCTTGCTATGTCCGCTACTCCAATCCCAAGAAC
GTTGGCTCTTGCTCTGTATGGGGACATGTCCCTTACACAGGTATTTTACAGGCTTATGGCATAT
AAGGCTTCGTTCGTTTCTTCTGTTTGGTAGTTGATTTTCTTCACACGCCAAACGAGAAAGCTCA
TTAGTACATGATTAATTAAGTTTCAACTATTATAAACTTGAAAAATGGTTTTCTTTGATTTTTT
AAACAACTCCTATATAGAAAACTTTTATAAAAACACAGCATTTAATAGTTTAAAAAACATTCTA
ACAGAAAACGAGGAAGTTGAAGTTTTGAGTTGAAGAAAAGAACATAGCCTAAATTGAGTATTCC
AAATACTTACTCATTGGAAGTAAAATGTCATATCGCGTACTATGTGGGGCACAGGGTGAAAACT
ACATACATCGAGGGACTAATTCTAGGCTAGCACAATTATATCTTTAACAACTAGTAGTCCACCC
TGTTGTTTTCCAGGATCCGCTACTTTATGACTTCACATATTGGATAGGATATAGTGCAAAAATG
TTCTTGCATTTTTCATTTTTCATGTTCCAGGACCTGTTACTTTAACAACTAGTAGGGTCTTTCA
TTTTTCACAGCTATTTCAAATCTTTACAATTGTGATCCACGTTTCTTATAGATCACGGACTTGC
CTCCAGGAAGACAACCTATAGAAACTCTTGCTCTTGAAGGAAATGATGCTGGTTTTGAATCTGT
CTTCCAGGTGATGACATGACTTCATTCAATATTTTTTCTTTTTGTTTCAGATCTTTGTTGTTTT
CCTTTTCTGTCCCAATCTGCACTTGGATATGGTTGGGATCAATTTGCTTATCATTTTTAAATAC
TTATGGCTTGAAGATGATGAGTGATGAACTGGTTGATGGAGGCAAGGTCTACCTCGTATATCCT
ATCATAGAAGAATCAGAGCAGCTACCACAACTTCATGCAGCAAAAGCCGAGTTTGATTCCATAA
AGCAAAAATTTGAAGGTTATCCCTGTGGGCTTTTGCACGGTCGCATGAGGAGCGATGAGAAGGA
TGGAGCCCTCAGCAGTTTTAGATCCGGGGAAACACGTATTCTCCTCTCAACACAAGTGATTGAG
ATTGGAGTCGATGTTCCTGATGCTTCCATGATGGTTGTCATGAATGCTGAGAGATTTGGAATAT
CTCAGCTGCACCAGTTAAGGGGTCGGGTAGGGCGTGGCGAAAGGAAATCCAGATGTGTGTTCCT
ATGCTCCACTCCTAGCGCGCTGCCAAGGTTGAAGGTGCTTGAGAAGTCATCCGATGGATTCTAC
TTGGCTAACGCCGACCTGCTACTGCGTGGCCCTGGTGATCTACTCGGCAAGAAACAGTCAGGGC
ATCTTCCAGAGTTTCCAATAGCTAGACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCT
TGCTGCACTTGTAAGTTCATTTGCTAAACCCCAATTCGTGTTGCTATTAATGATCAGACAACTC
TTCTATCACTGTAGTATATAACTTATTTGTTCATGTTTTTAAAAGTAGCTTTTTTGTGGCAGAA
CGTTTTGGGAACAAGCAACGACCTTGCACAATTTCCAGGACTAAAAGTTGAGCTCAGCATGAGA
CAACCGCTGTGCATTCTTGGAGATTGACCTGTGATCTTTACTGAGCAGACAGTGCAGTGAGAGT
GTGACACTGAACAGCGTTGTAGTGCTCATTGGGCAAAGCTTTTGCATTCTGGCTTGTGCGGTGC
AG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021