Plant Circular RNA Database

Detail information of Os10g0415600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os10g0415600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_006810
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 14536652-14538291  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0415600						
					
						Parent gene annotation
						
							Non-protein coding transcript. (Os10t0415600-01);Similar to acyl
amino-acid-releasing enzyme. (Os10t0415600-02);Similar to Prolyl
 oligopeptidase family protein, expressed. (Os10t0415600-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os10g0415600_circ_g.2 Os10g0415600_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0415600-03:5
Os10t0415600-02:5

General Information
CircRNA Name	Os10g0415600_circ_g.1
ID in PlantcircBase	osa_circ_006810
Alias	NA
Organism	Oryza sativa
Position	chr10: 14536652-14538291 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0415600
Parent gene annotation	Non-protein coding transcript. (Os10t0415600-01);Similar to acyl amino-acid-releasing enzyme. (Os10t0415600-02);Similar to Prolyl oligopeptidase family protein, expressed. (Os10t0415600-03)
Parent gene strand	+
Alternative splicing	Os10g0415600_circ_g.2 Os10g0415600_circ_g.3
Support reads	1
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0415600-03:5 Os10t0415600-02:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATGTCATTTCTGTTTATTGTACAGTGTCAGTAAGGGTGAAACTGCACCTACAACCAAGTTAAC
ATCAGAGTTGAGCAGTGCTTTTTTCCCACGATTCAGcattagtagaatatcatcgcacccaaca
gctatggctaccacacaagcctcagaagcagccactgagaaaggattgcctttggggatggatg
tctccatg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATTAGTAGAATATCATCGCACCCAACAGCTATGGCTACCACACAAGCCTCAGAAGCAGCCACT
GAGAAAGGATTGCCTTTGGGGATGGATGTCTCCATGGTGGATGAATATGCTTCCCAGTCCAAGC
TGCTGCAGGAATTCGTTAAAATTCCCACTATTGGCAACGCTTGGATCTTCAATTCCAAGACTGG
TATGTGCTGTTATTGCTATCTGGTTTTACTGAACTTAGGTTTCTTACTCTTCTTCTCGTGTTGT
GCAGAAAACACATCTAGGGCGATAGTTTCTGTTGGCCAAACAGATCTGTTGGCAAACAAAAAGA
GGAGCTTCCTATTAAATTCCCACATCTCAAAAAATTCCTCAAATTCTGTGGATTTCCAGTGGTC
TCCCTTCCCAATCGAAATGAGTGGAGTTTCAGCAGTAATTCCATCGCCATCTGGGAGAAAACTT
TTACTAATACGGAATTCTGAGGATGATTCCCCTACAAAACTAGAAGTTTGGGGCCCCTGTCAGT
TGGAGAACGAGATTCACATTGCACAATCTGTTCATGGATCACTCTATGTCGACGAATGGTAAAC
TATCCTGCCTCTTTTAGAACAACTTTCTTAGTTTTTTGTGTGGTAGTGGGTTTTTTTTTGGAAG
AAAGACAGAGGTAATTAGGGACGAGAGATTGCTCCATTCGCCACTTTTTGTACTTCATGTTTCT
TAAATGCAGGTTTGAAGGGATATCGTGGAATCAAGAAGAGACTTTAGTAGCTTACGTTGCTGAG
GAGCCTCCTCAACCGAAGCCAGAATTCAATGATTCAGGATACAAGAAGGCTGGCTCGTCTGAAA
AAGACTGCAAGAGCTGGAAGGGAAAAGGGGATTGGGAAGAAACTTGGGGAGAAACGTATTCCAA
GAAAAGGATACCTGCATTGTTCGTGGTCAACATTTCAAGGTGTGTTTCTGGTTGTTCTGAAGGT
TGAATCCAAAATAGCTTTAAAAGTACTGCAATTTTGTGAGGAATAGTTTCATTGCAGCGGTGAA
GTGCGAGCTGTGAAGGGCATACCGAGAACATTAAGTGTTGGCCAAGTGATTTGGGCTCCATCAT
CATCACATAGCCTGGTTTTTGTGGCGTGGTCATCTGATAATGGTTACCAAAAGACACCAAGGAA
ACTTGGAATTAAATACTGCTTTAACAGACCTTGTGCTCTGTATGCTGTTCCTGATCCTTTCATG
GAAGAAGCTGATAAGCCATCACTTAAGTGAGAACACCTGTCCTTGATGACAATATTTATTCAGT
TCTATTTCAACTATGCACCATTGTAGGCTTCCTGTTCTAACATATTAAGGTATTAATTGTCACA
TTTTAGTTATTTTCTAGTGATCGTGTGACACTGTAAATTCTTCTCTCAGAATAATTGTAGCAGC
ATATTTTTTTCAAGGAAAAAAAATCTTCCATATATATTTTCACTCTTTTTTCCTCATTAATCCT
AGTCCTGAGCAGACAAATGCTAAATGGATTGTATGCATCATGTCTCAAAAAATAGAAAGTTTAT
TTCTGATGTCATTTCTGTTTATTGTACAGTGTCAGTAAGGGTGAAACTGCACCTACAACCAAGT
TAACATCAGAGTTGAGCAGTGCTTTTTTCCCACGATTCAG
						
					

			
		

Sequences
Splice junction sequence	GATGTCATTTCTGTTTATTGTACAGTGTCAGTAAGGGTGAAACTGCACCTACAACCAAGTTAAC ATCAGAGTTGAGCAGTGCTTTTTTCCCACGATTCAGcattagtagaatatcatcgcacccaaca gctatggctaccacacaagcctcagaagcagccactgagaaaggattgcctttggggatggatg tctccatg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATTAGTAGAATATCATCGCACCCAACAGCTATGGCTACCACACAAGCCTCAGAAGCAGCCACT GAGAAAGGATTGCCTTTGGGGATGGATGTCTCCATGGTGGATGAATATGCTTCCCAGTCCAAGC TGCTGCAGGAATTCGTTAAAATTCCCACTATTGGCAACGCTTGGATCTTCAATTCCAAGACTGG TATGTGCTGTTATTGCTATCTGGTTTTACTGAACTTAGGTTTCTTACTCTTCTTCTCGTGTTGT GCAGAAAACACATCTAGGGCGATAGTTTCTGTTGGCCAAACAGATCTGTTGGCAAACAAAAAGA GGAGCTTCCTATTAAATTCCCACATCTCAAAAAATTCCTCAAATTCTGTGGATTTCCAGTGGTC TCCCTTCCCAATCGAAATGAGTGGAGTTTCAGCAGTAATTCCATCGCCATCTGGGAGAAAACTT TTACTAATACGGAATTCTGAGGATGATTCCCCTACAAAACTAGAAGTTTGGGGCCCCTGTCAGT TGGAGAACGAGATTCACATTGCACAATCTGTTCATGGATCACTCTATGTCGACGAATGGTAAAC TATCCTGCCTCTTTTAGAACAACTTTCTTAGTTTTTTGTGTGGTAGTGGGTTTTTTTTTGGAAG AAAGACAGAGGTAATTAGGGACGAGAGATTGCTCCATTCGCCACTTTTTGTACTTCATGTTTCT TAAATGCAGGTTTGAAGGGATATCGTGGAATCAAGAAGAGACTTTAGTAGCTTACGTTGCTGAG GAGCCTCCTCAACCGAAGCCAGAATTCAATGATTCAGGATACAAGAAGGCTGGCTCGTCTGAAA AAGACTGCAAGAGCTGGAAGGGAAAAGGGGATTGGGAAGAAACTTGGGGAGAAACGTATTCCAA GAAAAGGATACCTGCATTGTTCGTGGTCAACATTTCAAGGTGTGTTTCTGGTTGTTCTGAAGGT TGAATCCAAAATAGCTTTAAAAGTACTGCAATTTTGTGAGGAATAGTTTCATTGCAGCGGTGAA GTGCGAGCTGTGAAGGGCATACCGAGAACATTAAGTGTTGGCCAAGTGATTTGGGCTCCATCAT CATCACATAGCCTGGTTTTTGTGGCGTGGTCATCTGATAATGGTTACCAAAAGACACCAAGGAA ACTTGGAATTAAATACTGCTTTAACAGACCTTGTGCTCTGTATGCTGTTCCTGATCCTTTCATG GAAGAAGCTGATAAGCCATCACTTAAGTGAGAACACCTGTCCTTGATGACAATATTTATTCAGT TCTATTTCAACTATGCACCATTGTAGGCTTCCTGTTCTAACATATTAAGGTATTAATTGTCACA TTTTAGTTATTTTCTAGTGATCGTGTGACACTGTAAATTCTTCTCTCAGAATAATTGTAGCAGC ATATTTTTTTCAAGGAAAAAAAATCTTCCATATATATTTTCACTCTTTTTTCCTCATTAATCCT AGTCCTGAGCAGACAAATGCTAAATGGATTGTATGCATCATGTCTCAAAAAATAGAAAGTTTAT TTCTGATGTCATTTCTGTTTATTGTACAGTGTCAGTAAGGGTGAAACTGCACCTACAACCAAGT TAACATCAGAGTTGAGCAGTGCTTTTTTCCCACGATTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.179563811

Conservation Information
Conserved circRNAs	NA
PMCS	0.179563811

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							14536684-14538288(+)
14536998-14537785(-)
						
					

						Potential amino acid sequence
						
							MATTQASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVG
QTDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDDSPT
KLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKA
GSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSS
HSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETAPTTKLTS
ELSSAFFPRFSISRISSHPTAMATTQASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTI
GNAWIFNSKTENTSRAIVSVGQTDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAV
IPSPSGRKLLLIRNSEDDSPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVA
YVAEEPPQPKPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVR
AVKGIPRTLSVGQVIWAPSSSHSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEE
ADKPSLNVSKGETAPTTKLTSELSSAFFPRFSISRISSHPTAMATTQASEAATEKGLPLGMDVS
MVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQTDLLANKKRSFLLNSHISKNS
SNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDDSPTKLEVWGPCQLENEIHIAQSVHG
SLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGE
TYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSSHSLVFVAWSSDNGYQKTPRKLG
IKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETAPTTKLTSELSSAFFPRFSISRISSHPTAM
ATTQASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQ
TDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDDSPTK
LEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKAG
SSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSSH
SLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETAPTTKLTSE
LSSAFFPRF(+)
MWEFNRKLLFLFANRSVWPTETIALDVFSVLELKIQALPIVGILTNSCSSLDWEAYSSTMETSI
PKGNPFSVAASEACVVAIAVGCDDILLMLNRGKKALLNSDVNLVVGAVSPLLTLSDGLSASSMK
GSGTAYRAQGLLKQYLIPSFLGVFW*(-)
						
					

						Sponge-miRNAs
						
							osa-miR815c 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	14536684-14538288(+) 14536998-14537785(-)
Potential amino acid sequence	MATTQASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVG QTDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDDSPT KLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKA GSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSS HSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETAPTTKLTS ELSSAFFPRFSISRISSHPTAMATTQASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTI GNAWIFNSKTENTSRAIVSVGQTDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAV IPSPSGRKLLLIRNSEDDSPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVA YVAEEPPQPKPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVR AVKGIPRTLSVGQVIWAPSSSHSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEE ADKPSLNVSKGETAPTTKLTSELSSAFFPRFSISRISSHPTAMATTQASEAATEKGLPLGMDVS MVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQTDLLANKKRSFLLNSHISKNS SNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDDSPTKLEVWGPCQLENEIHIAQSVHG SLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGE TYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSSHSLVFVAWSSDNGYQKTPRKLG IKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETAPTTKLTSELSSAFFPRFSISRISSHPTAM ATTQASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQ TDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDDSPTK LEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKAG SSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSSH SLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETAPTTKLTSE LSSAFFPRF(+) MWEFNRKLLFLFANRSVWPTETIALDVFSVLELKIQALPIVGILTNSCSSLDWEAYSSTMETSI PKGNPFSVAASEACVVAIAVGCDDILLMLNRGKKALLNSDVNLVVGAVSPLLTLSDGLSASSMK GSGTAYRAQGLLKQYLIPSFLGVFW*(-)
Sponge-miRNAs	osa-miR815c
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0415600_circ_g.1

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