Detail information of Csa3G121680_circ_g.2


General Information
CircRNA Name Csa3G121680_circ_g.2
ID in PlantcircBase csa_circ_001488
Alias Chr3:7110620_7113700
Organism Cucumis sativus
Position chrChr3: 7110620-7113700  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa3G121680
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa3G121680_circ_g.1
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa3G121680.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAATTTGGAGGATATACTTTGGTGAGGAATTCCAGTGATTTGTTTCGAAGTTTTGGGTTCAAT
ACTCAGCCAGTGCTTATTGGGCTCATCCTATTTCAGgtttcatgattttaatgtatacttttga
aacttatttggatcttcggcaacacactgctctgaaactgccaactcttcccaaaactttggaa
ggagttat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 989
Transcript exons: 7110620-7110767,7110869-7110953,7111046-7111141,7111844-
7111909,7112083-7112181,7112401-7112514,7112606-7112716,
7113028-7113090,7113266-7113358,7113587-7113700
GTTTCATGATTTTAATGTATACTTTTGAAACTTATTTGGATCTTCGGCAACACACTGCTCTGAA
ACTGCCAACTCTTCCCAAAACTTTGGAAGGAGTTATAAGCCAAGAGAAATTTGAAAAATCCCGG
GCTTACAGTCTTGATAAGAGCCACTTCCATTTTGTTCACGAGTTCGTAACTATAGTGATGGATT
CTGCTATACTGTTTTTTGGAGTTCTGCCATGGTTTTGGAAGAAATCTGGAGAGTTTGTGGTATT
TGTTGGGCTCAATGCTGAAAACGAAATTTTGCACACACTTGCATTTCTAGCTGGGGTCATGATT
TGGTCACAGGTCACTGATCTACCATTTTCTCTCTACTCGACTTTTGTGATTGAGTCCCGCCACG
GTTTCAATAAACAAACAATATGGTTATTCTTCAGGGATATGATTAAAGGGATTTTGTTGTCCAT
CTTACTTGGCCCACCAATTGTATCTGCAATCATTATAATAGTGCAGAAAGGAGGCCCTTACCTT
GCCATCTATCTTTGGGCATTTATGTTCACATTATCTCTTGTGATGATGACCCTTTATCCAATTC
TTATAGCGCCTCTGTTCAATAAATTTACCCCTCTTCCTTCAGGTGATCTCAGGGAGAAGATTGA
GAAACTTGCTTCCTCCCTCAATTTTCCGCTGAAGAAGTTGTTTGTTGTTGATGGATCAACGAGG
TCAAGTCACAGCAATGCTTACATGTATGGTTTCTTCAAGAACAAGAGAATTGTCCTCTATGATA
CCCTGATTCAACAGTGCAAAAACGACGAGGAAATTGTTGCTGTCATAGCACACGAGTTGGGGCA
TTGGAAGCTAAATCATACAATGTACTCATTCATTGCTATACAGATTCTTACACTTTTGCAATTT
GGAGGATATACTTTGGTGAGGAATTCCAGTGATTTGTTTCGAAGTTTTGGGTTCAATACTCAGC
CAGTGCTTATTGGGCTCATCCTATTTCAG

Genomic sequence GTTTCATGATTTTAATGTATACTTTTGAAACTTATTTGGATCTTCGGCAACACACTGCTCTGAA
ACTGCCAACTCTTCCCAAAACTTTGGAAGGAGTTATAAGCCAAGAGAAATTTGAAAAATCCCGG
GCTTACAGTCTTGATAAGAGGTTTGTCTTGTTTGAAAGCAGATTTGTAAAAGGTTCCCCTGAAC
TTGAACTTGTATTTGTTTTGGTGTCTAATTTTATACCACGTCTCTCTTAACTTTCAGCCACTTC
CATTTTGTTCACGAGTTCGTAACTATAGTGATGGATTCTGCTATACTGTTTTTTGGAGTTCTGC
CATGGTTTTGGAAGGTGAGTAATTAAAGCTTATAAGTGAATCAATTCATTCAAGTTTTTTCTTT
ACTTCCGTTGAAATATTCATATTGGCCACTGTTGGCATGCAGAAATCTGGAGAGTTTGTGGTAT
TTGTTGGGCTCAATGCTGAAAACGAAATTTTGCACACACTTGCATTTCTAGCTGGGGTCATGAT
TTGGTCACAGGTATGCTCAATAAGTATAATTTAATTTCTATGTTCTAGTAATAGAGAATTTATT
TATTTTTAACTGCTCTGCCTGTTGGATTAATCACAAATTGTCATTGTAGAATCAGAATCTACTT
TACTTTTTGAAAACCACAATTCACATAATTAATTTACATAGAGCACTTTGTTTTCATACAGGAC
AAAACTGCATGCTGTTGTCCTCATTGATTTTAACCTTACCAAACTGGATGTGGAAACATTTTCT
GTGATGGGTGTTATGGGGGCCCTAAAACCGGAGCAAAAATTAATTAGTATTCATATTGCTTAAC
TGACTGTGGATTTCACAACTTGCATGTTGCATTTATACTGGAGATCAAATTCAGTATGCATTAT
GTTTTTCAATCATAATTCATGAATCAGATAAATTCTGCCAACTTTAAAGTTGAAATGAAAAGAA
AGATATGATAGTCTCAAGGACAGGGATAAATTTTGCTGGGAAGCATTAGAACTTGCTAGATTTC
AATGTTCACTGTGAAGTTCTCTAACCTCCATAATTTTGGAATTATCTCCTCATGTATTTTATGC
AGTTTTGTATTTCTTTTCACTAATGTCTGAATTCCTTGGTTTTGGAGTTCTAAATATTTTCATT
TACAGAGTGAATTTGGGGAATTTACGATTTGAAGTTGGTTTACATTGATCGTTTGTTTGGACTG
GTGTGCAGGTCACTGATCTACCATTTTCTCTCTACTCGACTTTTGTGATTGAGTCCCGCCACGG
TTTCAATAAAGTATGTATAATTGTTTATGATGGATCTCATTGACAGTAGGAGTGGGAGATGTCC
AATTTTGTTTTCTATTGACCAATTATTTTTCTTTTGGGATTCCAGTTGGAAGTTTCCCGTGTTG
TCCTGTGTACTTCCTAATTATTTCCCTAATTCCATATTTAATACCTCTTCTACAGCAAACAATA
TGGTTATTCTTCAGGGATATGATTAAAGGGATTTTGTTGTCCATCTTACTTGGCCCACCAATTG
TATCTGCAATCATTATAATAGTGCAGGTAAACTTGTGTAAGTTAGTAGTTTTAGTTTACATAGT
GCATTCAGAAGCAAGCCATATATTTCTAGTCTGCATGCCATCATCAATTCTATATTTTTTGGGA
GTTCTTTTCTCCATTCAATTCAATTTTTATATATACTCCTTTGTTCTGGATTAATATTCTTTAT
AACGTTTCTTTTGTCATACGCGAGGGCTAATAATATCTTTTAATTGCATACAGAAAGGAGGCCC
TTACCTTGCCATCTATCTTTGGGCATTTATGTTCACATTATCTCTTGTGATGATGACCCTTTAT
CCAATTCTTATAGCGCCTCTGTTCAATAAATTTACCCCTGTGAGTACCCAAATTGTGTTATTTG
ATCAAAGCTTTTATGACTATCTGTTTTTTCGTCCAGTCATCCCACTTTAATGCTCTGTGAAAAT
AGCTTCCTTCAGGTGATCTCAGGGAGAAGATTGAGAAACTTGCTTCCTCCCTCAATTTTCCGCT
GAAGAAGTTGTTTGTTGTTGATGGATCAACGAGGTCAAGTCACAGCAATGTAAATCTCTTTTGC
CAAATTCAGATTCTTGATTTTTTATCGCATATTTACTTGTGTTTTGCTATCTTATCAATATCAT
TTTCTTCTTTTTGCCTGCTTTATCAATTGGCCATCGAGAGTATTCTTCAGAAAGTGATTAGGAA
TTTTTATATTTGTGTCTAGTGTTATTAGGTTTGATCCTTTTGGATGATTACAAATTTACACAAC
GTATACCAACTTGGTTTCTATTGTATACCAACTTGGTTTCTATTGAGTATTCCTTTTTGGTGCT
TTCTTGCAATGATCTCATCAAATGACTGCCATCTATGCAGGCTTACATGTATGGTTTCTTCAAG
AACAAGAGAATTGTCCTCTATGATACCCTGATTCAACAGGTATGTTGAAATGTGTGGAAAGCTT
TTGTCATATTAATGCCTGTACATCCTGAACTTATTTTTGGACAGAAACATGTACAGTATTTTTT
TAATTTTTCATTACTTGTTTAGACTTTTTTTCTTCAAGTGTCTTGGTCATAGTAACTTTATGTT
TCCTTCCTGTTCTATTTATTAGTGCAAAAACGACGAGGAAATTGTTGCTGTCATAGCACACGAG
TTGGGGCATTGGAAGCTAAATCATACAATGTACTCATTCATTGCTATACAGGTATACTGAGATT
AATTCTAGTCATGATCAAACTTCATAGCTGTAGCACGTTGTATACTTGGTTTTTCTTTTCTTGA
AGAATCCGAAAAACATCAGCTGCTTTCATAATCAGCCACTAGACTTTGGTTTTATGCCCATTCA
TCTTATTAATTTTCCTTATCATTCTTATTTTTAAATGCAATTGGTTATGTTATCTGGAAGGCTC
ATTTTTTAACTGTTTGTGAGCAGATTCTTACACTTTTGCAATTTGGAGGATATACTTTGGTGAG
GAATTCCAGTGATTTGTTTCGAAGTTTTGGGTTCAATACTCAGCCAGTGCTTATTGGGCTCATC
CTATTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.484838824
Functional Information
Coding potential Y
Potential coding position 7110626-7110625(+)
Potential amino acid sequence MILMYTFETYLDLRQHTALKLPTLPKTLEGVISQEKFEKSRAYSLDKSHFHFVHEFVTIVMDSA
ILFFGVLPWFWKKSGEFVVFVGLNAENEILHTLAFLAGVMIWSQVTDLPFSLYSTFVIESRHGF
NKQTIWLFFRDMIKGILLSILLGPPIVSAIIIIVQKGGPYLAIYLWAFMFTLSLVMMTLYPILI
APLFNKFTPLPSGDLREKIEKLASSLNFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTL
IQQCKNDEEIVAVIAHELGHWKLNHTMYSFIAIQILTLLQFGGYTLVRNSSDLFRSFGFNTQPV
LIGLILFQVS*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019