Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G01800_circ_g.1 |
ID in PlantcircBase | ath_circ_035938 |
Alias | At_ciR1712 |
Organism | Arabidpsis thaliana |
Position | chr5: 307407-308176 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | AT5G01800 |
Parent gene annotation |
AT5g01800/T20L15_70 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 5 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT5G01800.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.168811038 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
307422-308173(+) |
Potential amino acid sequence |
MGGRFGVLLVLFLLSWSCHATNPILLEPFESAHDDNQVCELCDKYVTLVIDYLQDYDNQNELVE ALHISCSQIPPLKKQCLSMVDHYTQLFFTQVSTIKSDQICKRLNLCQAVTPAFASQVHQGNCEA CRETVSEVVTKLKDPETKISRGNMGGRFGVLLVLFLLSWSCHATNPILLEPFESAHDDNQVCEL CDKYVTLVIDYLQDYDNQNELVEALHISCSQIPPLKKQCLSMVDHYTQLFFTQVSTIKSDQICK RLNLCQAVTPAFASQVHQGNCEACRETVSEVVTKLKDPETKISRGNMGGRFGVLLVLFLLSWSC HATNPILLEPFESAHDDNQVCELCDKYVTLVIDYLQDYDNQNELVEALHISCSQIPPLKKQCLS MVDHYTQLFFTQVSTIKSDQICKRLNLCQAVTPAFASQVHQGNCEACRETVSEVVTKLKDPETK ISRGNMGGRFGVLLVLFLLSWSCHATNPILLEPFESAHDDNQVCELCDKYVTLVIDYLQDYDNQ NELVEALHISCSQIPPLKKQCLSMVDHYTQLFFTQVSTIKSDQICKRLNLCQAVTPAFASQVHQ GNCEACRETVSEVVTKLKDPETK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |