Detail information of BGIOSGA014754_circ_g.2


General Information
CircRNA Name BGIOSGA014754_circ_g.2
ID in PlantcircBase osi_circ_014558
Alias Chr04:25926194_25927894(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 24014868-24016568  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, find_circ
Parent gene BGIOSGA014754
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014754-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAACAAGGGTAGCTGCAATCTTCTCAAACTCCCGAAGTAATTCTTTCTCTGAGTGAACTCTTA
CTGGTTCCACTGGTTTTTCTGTTATATCCGTGTCCCcctcactcatcgcatctgctacacagca
ctttattagatcttcgtataaatcagctgaacgttgtatctccggggcatcagcccaatactcc
agtattaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCACTCATCGCATCTGCTACACAGCACTTTATTAGATCTTCGTATAAATCAGCTGAACGTTG
TATCTCCGGGGCATCAGCCCAATACTCCAGTATTAAAAGAGCGTACTCGCAGCACCTAATACGG
TAGATCGTAAGCCTCAAGGCTTCAGCACATTATATACATGGAAGCAGGAAGATAACCACACACA
AACATATACCTAGCACGGAGAACTGCACTTCGGTCATTCTTTGCTGTGTCAGCTATGCGAGGAA
GAATTCGTGAAATCTTGCAGTTCCGTAGAATCTGCAATATACCTCATGTCAGCAACAAGAGACT
GAATGATAGCAACAAAATATATATTAAAAAATAACTCACGGTTTTTATGCATGTATCGGCTGAT
TCAGCTATGACAAGCACTGTTATGACAACAAGCTTAAAAAGCATCTGAAAAATTCACAAATATG
TTAGTTTTATTGAAACAATATAAGGAAGAAAAGAAAATTTGTTTGTATATACCGGAATAAATAG
TTCAGCACATGGCTCAAAATCACCAAGGAGTTCTTTGGATAGTACATTGAGTAGATGGCATGCC
TGGTGAATAAAAAGAAGATGGTAAGGAAGTATCCTGTGAAATATGCAGCTCATTTTGGGCAACA
AAGCAGGAAGAGAAGAAAAATTGTTGGAACTAAACAGCTACTCCCTTCGTTTTCATAATATTTG
GCAATTGATTTACTTTGACCAATGATGTTTTCAAAATCGTTTGATTACGATGAATGGGATTTAT
ATGTTTATATTCACCGTGTAACACACTTCATTAGTATGATATATATTTTAATAATCATAAGTTT
ATTTATAAAACAGGAGTGGTCAAACTAAAACAATGCCAAGTCGAATTGCCAAGTATTGTGAAAC
GGAGGGAGTATGTACTTACCAGAAGAATTGACGGGTGAACAACATACCTGTTTTACAATGCTAG
ACCGTCGATCAGACAGCTGAGTTGATAGAGGTGGAACCAACTGCTTCAAGAGCATAAGAAAAGA
TGGATAATCAATAGCACCTGACAAGATAAATAAAAACATTTTAAACTATCATACAGAATCATAT
TAGCAATCAATAAGGGGTTATCTGTTCATAATGAATGATATAGCTTTGATATCAATATGAAGGC
TTAAAGTGACAAATTTCAGTTGCATCATCAAGATTTTCAAGTCCATAGTTCTTTTGTTGAACAA
ATATCACTAGATAGTGCTAATTTATTGAAGGGTGTTGCAGTGATTTCCTAAAGACATAATTACC
ATTTATTTCACTTCACTGAAAATTTCAAGAGCATGAAATCAATTAGGTTTGTTGCATAGTTATC
AACAAAGGGACAGTGACAAAACGTTTACATCTACATCCTAGCAATGAGGTATCATCTCTGGATA
GAAATAACAGTTTCTAATTTGTACAATCAATACATGCTACGAAGTCTCTGCACACAGTAATCAT
TAACGAGCATATTTGCACAAAACATAATCAAGGACAGTAGCATATGGGTGAATTCAGAGCATCA
AACCTCCATACACCAAAGCTTCAATCCTTTGCATGGCAGCAATACGCACGGACCAGTCCTTTTC
TGGAACAAGGGTAGCTGCAATCTTCTCAAACTCCCGAAGTAATTCTTTCTCTGAGTGAACTCTT
ACTGGTTCCACTGGTTTTTCTGTTATATCCGTGTCCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021