Detail information of BGIOSGA035600_circ_g.1


General Information
CircRNA Name BGIOSGA035600_circ_g.1
ID in PlantcircBase osi_circ_003217
Alias 11:20382798|20383626
Organism Oryza sativa ssp. indica
Position chr11: 20382798-20383626  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA035600
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035600_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA035600-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTACAACATATTATGAGCAAGATGTAAGAGAGAAGCTTCGCATACTCGACTGGGCTCCTATTGT
TTATTGTTCTGCAACACATGGCAGCAGCGTTGACAAgaactggatggagttgaagaagatggaa
actatattcctgctattgccattgtcggaagacctaatgtcgggaaaagtagtattctcaatgc
tttagttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAACTGGATGGAGTTGAAGAAGATGGAAACTATATTCCTGCTATTGCCATTGTCGGAAGACCTA
ATGTCGGGAAAAGTAGTATTCTCAATGCTTTAGTTGGAGAAGATAGAACTATTGTGAGCCCTGT
TAGTGGGACAACCCGTGATGCCATAGATACCGAGTTCACCACAGAAGATGGGCAGGTTTGTTCA
GAATGCTTATGAAAGTTTAAGTGACCAAGAGCAGCATCATTATTTCATTATTGACCCTAGCTAT
GTCCACTTTTCATGTATCTTTCATCTTTGTAGCAAAACACAATTTGAATTGGAAGAAAGAAATT
TACATCTCATAGGAAAGTAATTCTAATTTGCTGATATTGCAATATGCTGCAGAAGTACAAACTC
ATTGACACCGCTGGCATCCGACGAAGGGCAGCAGTTGCTTCTGCTGGCAGCACAACGGAAACAC
TTTCAGTAAAACGTGCATTTCGTGCAATCCGCCGGTCTGATGTGGTTGCCCTTGTTGTTGAAGC
AATGGCCTGCATTACGGAGCAGGTATCTCTACCCCATCACATGCACATGTGCACCCCCAAACAA
TTCAAAGAGATGTTGTCTTACCAATCTTTTCTAACATGGTGAATTTCTGTGGTACCAAGGACTA
TAAAATAGCAGAAAGAATTGAGAAAGAAGGAAAAGCATGTGTAATTGTTGTGAACAAATGGGAC
ACAATCCCAAACAAGAACCATCAGAGTACAACATATTATGAGCAAGATGTAAGAGAGAAGCTTC
GCATACTCGACTGGGCTCCTATTGTTTATTGTTCTGCAACACATGGCAGCAGCGTTGACAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 20383312-20382891(+)
Potential amino acid sequence MACITEQDYKIAERIEKEGKACVIVVNKWDTIPNKNHQSTTYYEQDVREKLRILDWAPIVYCSA
THGSSVDKNWMELKKMETIFLLLPLSEDLMSGKVVFSML*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021