Detail information of BGIOSGA014394_circ_g.5


General Information
CircRNA Name BGIOSGA014394_circ_g.5
ID in PlantcircBase osi_circ_014751
Alias Chr04:31393939_31394830(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29455332-29456223  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014394
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014394-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGCTACCTATTCTCAGTTGCAGCCAGGCGATCAAGTGCGTCATTCACCTCTTTTATTGTCAA
TCCCCCAGAAGTCATTCCTTGTCTCCGCTGTAGCACccttgagaagaaatgaatctcttcccca
ttcttgtgaatttgaatacggtcaccgtcaaatttgcactcagcaaccacttgttttccgtgaa
gctgaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGAGAAGAAATGAATCTCTTCCCCATTCTTGTGAATTTGAATACGGTCACCGTCAAATTTG
CACTCAGCAACCACTTGTTTTCCGTGAAGCTGAAGAGGGAGGGAGCATATAACCAAACAAATTC
TAAGATGAGTATATGAAAAAAGTGAGTGTCCTTAGAAATGACTAAATATTCCATTGATACACTA
TAAGCTAAAAAATAAATAAAAAGACCTTCTTCCAAGCAGATGAGGCATTATTGACTCTCATAGC
TAGCTGAGGCCTGACAGCCTTCCCCACTTCTATATCCTGGTCATACAGCATAGAGATATCATGG
AGATAAACTTGCTTCCGTGTAAAAATTTTATGCATCAGAATGGCAGCATGCAGGCAAAGACAGG
CAGACATAGAATGTTAGTATCATCACCTGGCGCTTATGCCTCTGACTTCGATCATTAAGCTTTT
CACAGACCAATCTCAGGTCACAAGTGACATTGAACAAGTCTTCAGCATCAGGATGGAACTCATG
AAATACGCTCTTCTCACTGATCCCCAATTTCAAATCTATGATGAAGTACGGAAAGCATCAACAG
CAATCCAAAACCACTGCAGAGATGCAACTTGTAGAGCAACCCAACCTTTCAGAATAATCATCAA
GAGCCACTTCATTTCAAGGGCATTGGTTTTCTTGATCAGACTAGAAAGAATCGAAGCCTTCTCA
GACCTGTCAAGAATGAGGAGTAACTTCTCACTTTCAAGGCATACACTGATGCACGGCACAGTAA
AAATGCAAATAGATGTATTATGTATAAGCTACCTATTCTCAGTTGCAGCCAGGCGATCAAGTGC
GTCATTCACCTCTTTTATTGTCAATCCCCCAGAAGTCATTCCTTGTCTCCGCTGTAGCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021