Detail information of BGIOSGA022217_circ_g.1


General Information
CircRNA Name BGIOSGA022217_circ_g.1
ID in PlantcircBase osi_circ_016167
Alias Chr06:1266556_1267059(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 1577076-1577579  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA022217
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA022217-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGGCTGCATCCGGACGACCAGAAGGTGATGTACAAGGACAAGGAGAGGGACTCCAAGGCGTTC
CTGGACATGGCCGGCGTCAAGGACAGGTCCAAGCTGgccctaaggccaagaaaggcgcgacggt
gaagttcgggtcgatgaagaatcctcctcctcccccggtggttggcgccgccgccggagcagcg
gcggcggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCCTAAGGCCAAGAAAGGCGCGACGGTGAAGTTCGGGTCGATGAAGAATCCTCCTCCTCCCCC
GGTGGTTGGCGCCGCCGCCGGAGCAGCGGCGGCGGCGGCGGGTGGGAAGGTGCCGGCGGAGGAG
GTGTGGGAGGTGCGGCCAGGCGGGATGCTGGTGCAGAAGAGGGGCGGCGGCGCCGACGAGGAGC
CCGTCAACGTGAAGCCGGTGCCCACCATCCGCGTCAAGGTCAAGCACGCCGGCATCACCCACGA
GATCTACATCAACTCGCAGGCGTCCTTCGGTCAGTGCCCGCCGCCGCCGTCGTCGTCGTCGTCG
ACGGCGAACTCGATGGATGGGGGCCATGTCTGATTTCGTTGTGGGTGGTGCAGGGGAGCTGAAG
AAGATGGTGGCGGCGCGAACGGGGCTGCATCCGGACGACCAGAAGGTGATGTACAAGGACAAGG
AGAGGGACTCCAAGGCGTTCCTGGACATGGCCGGCGTCAAGGACAGGTCCAAGCTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021