Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | POPTR_0005s26310_circ_g.1 |
| ID in PlantcircBase | pop_circ_001693 |
| Alias | Chr05:24771371-24774613 |
| Organism | Populus trichocarpa |
| Position | chr5: 24383873-24387115 JBrowse» |
| Reference genome | Populus trichocarpa genome v3.0 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | POPTR_0005s26310 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | stem xylem |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | POPTR_0005s26310.1:10 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.116714482 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
24386884-24383875(-) 24383933-24387108(-) |
| Potential amino acid sequence |
MWPYLDTAICKTAKTIAKPIIAELIPKYKIDSVEFETLTLGSLPPTFPGMKVYVTGEKELIMEP VLKWAGNPNIIIAVKAFGLKATVQVVDLQVFATPRITLKPLVPSFPCFANIYVSLLQKPHVDFG LKLLGADAMSIPGLYKFVQELIKDQVASMYLWPKTLVVPIVDASKAMKRPVGILTVKVLKATEL KKKDLLGGSDPYVKLKLTEDALPSKKTTVKNKNLNPEWNEEFNITVKDPESQALEILVYDWEQV GKHDKMGMNVIPLKDLTPDEQKVMTLDLLKNMDPNDVQNKKSRGQIVVEVVYKPFKDLEAEKDI VDPSAVGKAPEGTPAGGGLLVVIVHEAQDVEGKHHTNPYVRLLFKGEDKRTKQVKKNRDPRWGE DFQFTLDEPPTNERLHVEVLSSSKMSLLHSKDPVVRPLIEQDSKTLQRLLPEIPQWVKNPDYDR VDWLNKLIENMWPYLDTAICKTAKTIAKPIIAELIPKYKIDSVEFETLTLGSLPPTFPGMKVYV TGEKELIMEPVLKWAGNPNIIIAVKAFGLKATVQVVDLQVFATPRITLKPLVPSFPCFANIYVS LLQKPHVDFGLKLLGADAMSIPGLYKFVQELIKDQVASMYLWPKTLVVPIVDASKAMKRPVGIL TVKVLKATELKKKDLLGGSDPYVKLKLTEDALPSKKTTVKNKNLNPEWNEEFNITVKDPESQAL EILVYDWEQVGKHDKMGMNVIPLKDLTPDEQKVMTLDLLKNMDPNDVQNKKSRGQIVVEVVYKP FKDLEAEKDIVDPSAVGKAPEGTPAGGGLLVVIVHEAQDVEGKHHTNPYVRLLFKGEDKRTKQV KKNRDPRWGEDFQFTLDEPPTNERLHVEVLSSSKMSLLHSKDPVVRPLIEQDSKTLQRLLPEIP QWVKNPDYDRVDWLNKLIENMWPYLDTAICKTAKTIAKPIIAELIPKYKIDSVEFETLTLGSLP PTFPGMKVYVTGEKELIMEPVLKWAGNPNIIIAVKAFGLKATVQVVDLQVFATPRITLKPLVPS FPCFANIYVSLLQKPHVDFGLKLLGADAMSIPGLYKFVQELIKDQVASMYLWPKTLVVPIVDAS KAMKRPVGILTVKVLKATELKKKDLLGGSDPYVKLKLTEDALPSKKTTVKNKNLNPEWNEEFNI TVKDPESQALEILVYDWEQVGKHDKMGMNVIPLKDLTPDEQKVMTLDLLKNMDPNDVQNKKSRG QIVVEVVYKPFKDLEAEKDIVDPSAVGKAPEGTPAGGGLLVVIVHEAQDVEGKHHTNPYVRLLF KGEDKRTKQVKKNRDPRWGEDFQFTLDEPPTNERLHVEVLSSSKMSLLHSKDPVVRPLIEQDSK TLQRLLPEIPQWVKNPDYDRVDWLNKLIENMWPYLDTAICKTAKTIAKPIIAELIPKYKIDSVE FETLTLGSLPPTFPGMKVYVTGEKELIMEPVLKWAGNPNIIIAVKAFGLKATVQVVDLQVFATP RITLKPLVPSFPCFANIYVSLLQKPHVDFGLKLLGADAMSIPGLYKFVQELIKDQVASMYLWPK TLVVPIVDASKAMKRPVGILTVKVLKATELKKKDLLGGSDPYVKLKLTEDALPSKKTTVKNKNL NPEWNEEFNITVKDPESQALEILVYDWEQVGKHDKMGMNVIPLKDLTPDEQKVMTLDLLKNMDP NDVQNKKSRGQIVVEVVYKPFKDLEAEKDIVDPSAVGKAPEGTPAGGGLLVVIVHEAQDVEGKH HTNPYVRLLFKGEDKRTKQVKKNRDPRWGEDFQFTLDEPPTNERLHVEVLSSSKMSLLHSK(-) MKDFMWKFLVPQRCLYFTLRIL*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Liu et al., 2021 |