Plant Circular RNA Database

Detail information of Zm00001d048546_circ_g.1

			
				
						 General Information
					

				
						CircRNA Name
						Zm00001d048546_circ_g.1
					

						ID in PlantcircBase
						zma_circ_010120
					

						Alias
						Zm09circ00082, zma_circ_0003123, ZmciR382
					

						Organism
						
							Zea mays						
					

						Position
						
							chr9: 158409944-158411256  JBrowse»						
					

						Reference genome
						
							AGPv4.38						
					

						Type  
						
							u-circRNA							
									
								

					

						Identification method
						CIRI2, find_circ
					

						Parent gene
						
							Zm00001d048546						
					

						Parent gene annotation
						
							transcription regulators
							
					

						Parent gene strand
						-
					

						Alternative splicing
						
							NA						
					

						Support reads
						NA
					

						Tissues
						leaf, endosperm, root
					

						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

					

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

					

						Number of exons covered
						Zm00001d048546_T071:5
Zm00001d048546_T043:5
Zm00001d048546_T035:5
Zm00001d048546_T075:5
Zm00001d048546_T011:4
Zm00001d048546_T004:4
Zm00001d048546_T013:5
Zm00001d048546_T047:4
Zm00001d048546_T016:5
Zm00001d048546_T001:4
Zm00001d048546_T052:5
Zm00001d048546_T062:5
Zm00001d048546_T009:3
Zm00001d048546_T019:5
Zm00001d048546_T041:5
Zm00001d048546_T006:4
Zm00001d048546_T113:5
Zm00001d048546_T055:5
Zm00001d048546_T072:5
Zm00001d048546_T014:4
Zm00001d048546_T032:4
Zm00001d048546_T112:5
Zm00001d048546_T005:4
Zm00001d048546_T046:5
Zm00001d048546_T084:5
Zm00001d048546_T076:5
Zm00001d048546_T021:5
Zm00001d048546_T073:5
Zm00001d048546_T087:5
Zm00001d048546_T078:4
Zm00001d048546_T030:5
Zm00001d048546_T024:5
Zm00001d048546_T083:5
Zm00001d048546_T115:5
Zm00001d048546_T066:5
Zm00001d048546_T074:5
Zm00001d048546_T033:3
Zm00001d048546_T069:5
Zm00001d048546_T063:5
Zm00001d048546_T114:5
Zm00001d048546_T058:4
Zm00001d048546_T008:5
Zm00001d048546_T085:5
Zm00001d048546_T038:5
Zm00001d048546_T079:5
Zm00001d048546_T007:5
Zm00001d048546_T068:5
Zm00001d048546_T081:5
Zm00001d048546_T026:4
Zm00001d048546_T070:5
Zm00001d048546_T028:4
Zm00001d048546_T049:5
Zm00001d048546_T065:5
Zm00001d048546_T077:5
Zm00001d048546_T054:5
Zm00001d048546_T111:5
Zm00001d048546_T060:4
Zm00001d048546_T039:4
Zm00001d048546_T067:5

					

			
		

General Information
CircRNA Name	Zm00001d048546_circ_g.1
ID in PlantcircBase	zma_circ_010120
Alias	Zm09circ00082, zma_circ_0003123, ZmciR382
Organism	Zea mays
Position	chr9: 158409944-158411256 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2, find_circ
Parent gene	Zm00001d048546
Parent gene annotation	transcription regulators
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf, endosperm, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d048546_T071:5 Zm00001d048546_T043:5 Zm00001d048546_T035:5 Zm00001d048546_T075:5 Zm00001d048546_T011:4 Zm00001d048546_T004:4 Zm00001d048546_T013:5 Zm00001d048546_T047:4 Zm00001d048546_T016:5 Zm00001d048546_T001:4 Zm00001d048546_T052:5 Zm00001d048546_T062:5 Zm00001d048546_T009:3 Zm00001d048546_T019:5 Zm00001d048546_T041:5 Zm00001d048546_T006:4 Zm00001d048546_T113:5 Zm00001d048546_T055:5 Zm00001d048546_T072:5 Zm00001d048546_T014:4 Zm00001d048546_T032:4 Zm00001d048546_T112:5 Zm00001d048546_T005:4 Zm00001d048546_T046:5 Zm00001d048546_T084:5 Zm00001d048546_T076:5 Zm00001d048546_T021:5 Zm00001d048546_T073:5 Zm00001d048546_T087:5 Zm00001d048546_T078:4 Zm00001d048546_T030:5 Zm00001d048546_T024:5 Zm00001d048546_T083:5 Zm00001d048546_T115:5 Zm00001d048546_T066:5 Zm00001d048546_T074:5 Zm00001d048546_T033:3 Zm00001d048546_T069:5 Zm00001d048546_T063:5 Zm00001d048546_T114:5 Zm00001d048546_T058:4 Zm00001d048546_T008:5 Zm00001d048546_T085:5 Zm00001d048546_T038:5 Zm00001d048546_T079:5 Zm00001d048546_T007:5 Zm00001d048546_T068:5 Zm00001d048546_T081:5 Zm00001d048546_T026:4 Zm00001d048546_T070:5 Zm00001d048546_T028:4 Zm00001d048546_T049:5 Zm00001d048546_T065:5 Zm00001d048546_T077:5 Zm00001d048546_T054:5 Zm00001d048546_T111:5 Zm00001d048546_T060:4 Zm00001d048546_T039:4 Zm00001d048546_T067:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TTCGATATTGCATCAACAACATTGTGAAGCTCTGATATGCTAACAGGATCTTGTGTAATCAATG
TTTGGACAAGAGACATTGCAAACTCCGTTGCAACCTcttgagaaccataaccacgagctttgca
tatgaatcaatggaaaaatatgaaatatggggttgctgtggtgattgctgagatgatccaccag
gagcaaca

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							CTTGAGAACCATAACCACGAGCTTTGCATATGAATCAATGGAAAAATATGAAATATGGGGTTGC
TGTGGTGATTGCTGAGATGATCCACCAGGAGCAACAATTTGCTCGGAGACTAGAGAGTGTGTAA
CAGCAAGTTCCTGAATGATTCAAAATAAGTATCCAGGTATGACAAAGTGTAGTACAAAATCTGG
TAGAAAGGTAGATTCATCACCGTGAGAATATGGAAGAAGCGTTCAGAGATATCATCTCCATTCA
ACAGACTATCCTGCTCCAACTGTGTGACAAAACGACTGTATATTGCATCACTAGCATTTACATG
ACTACATATCTGACACCACTCAGAAAACAGGACTGCCACCTGTACATCAAACAATTTAACAGAT
TAGCTAATAATCTAGCACATAGATTCACGGTATAGTTGTTAGAATGGCTTGAGCAAGAACCACA
ACAAAATACAGGTAACACCACCAATGGAAGACATTGACAGCTTACTATCTCCTGGTTGAACTAA
CATGCTAATATGTGATGGCATCACCACAATCATGACAAGGAATTCTACGAATAGAAAAAGGATC
ATTTCAAGATACAAAGAAAAAATTTCTCATCAAACCAAACAAAAAACTCATGTGTACACTAAGG
AACTCTGATTCCATACCCAAAAAATGAAAATGGAATAGAAGGAAAACAGAAACAGAACCAAAGC
ATCTAATTAAAAATGAAAAGAATAGGTTTATGTAAATCAAACTAAGGTTCTTGTAAATCAGAAG
AATTCATAATACATAAAACCAAGTTAAGCATGTCAACTGAACCTGATTTGGATCAATTAGTGTA
GTTTCATTAGCAATGCTTTCCTCTTTGTTTACCTGGGCAGCTAGAACCTACAAATTAAGAGAAA
CACGATTAAAATAAAAAGGGCAGACATTGTGAGGACAAGAGTTATCGAAGAATATTCAGACGTG
AAGGCAACTAATATGTTTAGACCAGATCGTTAACATTTTTATCCTTTAGAAGTTTGACCTTTTC
TTCCTTCCCAATAACAACAAAACCAGTAGGGGTGCTCACATTATTCCTTGCGATCCCAATCAAT
TGTTGCAACGATTCAGGTGAACCTGGTCCCCATGCAAGCTGCAAACCCACGTTCCCTACCGTTG
AACCTGGTCTATGGATAAATACTAAAAGAAAATAAAGAGCAGGTCCAGAAATATACATACTTTC
GATATTGCATCAACAACATTGTGAAGCTCTGATATGCTAACAGGATCTTGTGTAATCAATGTTT
GGACAAGAGACATTGCAAACTCCGTTGCAACCT

Sequences
Splice junction sequence	TTCGATATTGCATCAACAACATTGTGAAGCTCTGATATGCTAACAGGATCTTGTGTAATCAATG TTTGGACAAGAGACATTGCAAACTCCGTTGCAACCTcttgagaaccataaccacgagctttgca tatgaatcaatggaaaaatatgaaatatggggttgctgtggtgattgctgagatgatccaccag gagcaaca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGAGAACCATAACCACGAGCTTTGCATATGAATCAATGGAAAAATATGAAATATGGGGTTGC TGTGGTGATTGCTGAGATGATCCACCAGGAGCAACAATTTGCTCGGAGACTAGAGAGTGTGTAA CAGCAAGTTCCTGAATGATTCAAAATAAGTATCCAGGTATGACAAAGTGTAGTACAAAATCTGG TAGAAAGGTAGATTCATCACCGTGAGAATATGGAAGAAGCGTTCAGAGATATCATCTCCATTCA ACAGACTATCCTGCTCCAACTGTGTGACAAAACGACTGTATATTGCATCACTAGCATTTACATG ACTACATATCTGACACCACTCAGAAAACAGGACTGCCACCTGTACATCAAACAATTTAACAGAT TAGCTAATAATCTAGCACATAGATTCACGGTATAGTTGTTAGAATGGCTTGAGCAAGAACCACA ACAAAATACAGGTAACACCACCAATGGAAGACATTGACAGCTTACTATCTCCTGGTTGAACTAA CATGCTAATATGTGATGGCATCACCACAATCATGACAAGGAATTCTACGAATAGAAAAAGGATC ATTTCAAGATACAAAGAAAAAATTTCTCATCAAACCAAACAAAAAACTCATGTGTACACTAAGG AACTCTGATTCCATACCCAAAAAATGAAAATGGAATAGAAGGAAAACAGAAACAGAACCAAAGC ATCTAATTAAAAATGAAAAGAATAGGTTTATGTAAATCAAACTAAGGTTCTTGTAAATCAGAAG AATTCATAATACATAAAACCAAGTTAAGCATGTCAACTGAACCTGATTTGGATCAATTAGTGTA GTTTCATTAGCAATGCTTTCCTCTTTGTTTACCTGGGCAGCTAGAACCTACAAATTAAGAGAAA CACGATTAAAATAAAAAGGGCAGACATTGTGAGGACAAGAGTTATCGAAGAATATTCAGACGTG AAGGCAACTAATATGTTTAGACCAGATCGTTAACATTTTTATCCTTTAGAAGTTTGACCTTTTC TTCCTTCCCAATAACAACAAAACCAGTAGGGGTGCTCACATTATTCCTTGCGATCCCAATCAAT TGTTGCAACGATTCAGGTGAACCTGGTCCCCATGCAAGCTGCAAACCCACGTTCCCTACCGTTG AACCTGGTCTATGGATAAATACTAAAAGAAAATAAAGAGCAGGTCCAGAAATATACATACTTTC GATATTGCATCAACAACATTGTGAAGCTCTGATATGCTAACAGGATCTTGTGTAATCAATGTTT GGACAAGAGACATTGCAAACTCCGTTGCAACCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.103083162

Conservation Information
Conserved circRNAs	NA
PMCS	0.103083162

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							158411219-158409973(+)
158411194-158409945(+)
158409974-158411198(-)
						
						Potential amino acid sequence
						
							MFGQETLQTPLQPLENHNHELCI*(+)
MLTGSCVINVWTRDIANSVATS*(+)
MQSSWLWFSRGCNGVCNVSCPNIDYTRSC*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to drought stress

Functional Information
Coding potential	Y
Potential coding position	158411219-158409973(+) 158411194-158409945(+) 158409974-158411198(-)
Potential amino acid sequence	MFGQETLQTPLQPLENHNHELCI(+) MLTGSCVINVWTRDIANSVATS(+) MQSSWLWFSRGCNGVCNVSCPNIDYTRSC*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to drought stress

			
						 Other Information
					
						References
						Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019

circRNA

Detail information of Zm00001d048546_circ_g.1

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