Detail information of Os01g0256800_circ_g.3


General Information
CircRNA Name Os01g0256800_circ_g.3
ID in PlantcircBase osa_circ_001176
Alias NA
Organism Oryza sativa
Position chr1: 8565161-8568571  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0256800
Parent gene annotation Similar to zinc finger helicase family protein. (Os01t0256800-01
);Hypothetical conserved gene. (Os01t0256800-02)
Parent gene strand -
Alternative splicing Os01g0256800_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0256800-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTGAGCAATGGCTACTACTGCAAACCTCCTTGGCTGCGTGCATAGAATGGGTTCCATGTTTT
CTTCCAGGAGGAACTGTGGAACCATAGAACTCTTTCcatgaggatcgttcatagctctggactc
tgcacaacaaatcatgagtacttgctctcttaaggacaatcttaaaatggcaggatactcatga
tcagttaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGAGGATCGTTCATAGCTCTGGACTCTGCACAACAAATCATGAGTACTTGCTCTCTTAAGGA
CAATCTTAAAATGGCAGGATACTCATGATCAGTTAAACTGTTATAAAATGGCCCAGTTACCAAG
CGATAAATTTGACCATCACAGGTTCGCCCTGTCCTGCCTTTCCGCTGTTCAGCCTAGAAATAAT
TACAAAAAAATTGTAACGTACAATCTTTAGGGTCAAACTTTAGTTGCAAACGAAAAACATCAGT
ATATTTGTGAGATATACCTGAGATTTGGAAACCCATACAAGCTCAGCTGAGTCTGTTTTCCTGA
TTGGATCCCAATAAACTTGCAGTGATCTACAGGAGTCAATAACATAAGCAACTCCTGGAATAGT
GACTGATGATTCTGCAATGTTTGTTGCCAGTATAACCTGCAACAAAGATACAAACAAGAAGATT
ATAGTTCAATCGCATTTGAGTGAGTTCAATCGAAACCAATTAGACAGAGGAGAATATTCAATCA
TGTAAATTTTGAACATTACAGGCCAAATCAATGTTACATTATTTTTAAGTGCAAATTATATGAT
TATCAGGGTCACTTGGTACTCCTGGTCTCTGGATCTGTTGCTGTGGGAGGATGCAGTGGACAGA
GCCCCTGTAGCCGGGGACTGAATCCTGTGTTCTAAAGCTAGTGCTAGTGGAAAACAATGTTGGA
AAGGAAAATAAATCAGAACTTGCTTTTTGCAGATGATGGCAAAGTGGCAAACCTCATTAATATA
TTCAGAACACAACTTTAAAGGTAATTAAAAACATGCAATGGGTTTTAAATAAATTTGCAATTTA
TGCTGAAGAGTATTGCAGGCTTGCAGCTATGTACCTGCAAGTAGAAAACAAGGATAGTGATAAC
AGGACAGCAATAATTCTATGCACTGTCTATATAATGTCTATCATTGTGTCTGTTCATAGGAGAA
AATCTTAACAGTTCAGAAACATTTAACTAAAACACAAAGCTGAATTTCAATGCAGAAAATTGTA
CCTTACGACAGGACTTTGAGACCTTCATAGTTTGAAGAGCTTCATCGGTGTCAATGCTGCGATG
GAGAATGTGTACTTTGAACATTGAACTAGCAGATAGCAGACGAATCCATTGCTGCTCCAAAGCA
TAGTATGTAGGAAGGAACACCAAAATACTCTTCCCAATGTCTGGCTCATTTTGGTGTATATGCA
ACAATAACCTATGAATAAGTTCATACACATCTGGTTTTAGACCAGCATCAGCTGCAGTGTTGGG
TCCAGAGCAGTATTTTGTTGATAGTGATTCCGAGTCCATCTTGAGAATATCAACAATCTGTCCA
GCATTTCATAGCATTACGTACTAAACATGTGAGCGATAAGCTATACAGTAGATTACATTAAAAT
AGAAAACAACTAGCAGCGACAGGTAAAGGAACATACTTCTAATGATGACGATAATAGTAAAACT
CATGTTGTTTCGGCCTTGCAAACCGTGCGAGAAGCTGTCATTTCGAGTCTACATCGCCTGATCT
CCACTTCCTTTGTCCGTTTTAGTATCCAGTTAGTGAACGTAAGTTCCCGTGCATTTTGTTTAAG
AAAAGTAGAGTTGTTTAAAGGCCCTTATTTAGCAAGCTTAGCATAGCCCCTTTATGTCTGTACC
TTCAACTCGAAAACCAAAGGAGTGCCTTCGAGAGAGAGCTCTAACACCACTCGGCATTTTTAGA
GACATGCTCTTTTTTGAAGAAAGTACTTTTTTGAAAGAAAGGAATAAAATAAATATACTCGATT
TCAGAAATATCAATAAGTTGGCCTAAACTAGGAACAGACAGTAGTACTGTTAAAAGTTCAAAAT
CATAATTTTAAGTTGCTGTATTTAAGAAATACAGCTTAAAAAGTAGATTATTATGATAGGTCAA
TGATAGAATAGTAAAATCCATGCTACAAAACCGAGCCTGTAGAAAATACAGGAATAAACTGCTG
TATGTGTGGTAAATTGTTAATTACATACCATGGAGGAAAAATAAGGTACAATATGCAACTTAAA
CTAGAAATTAATTTGTTTTCTTATTGAAGTTTAATGGTAATTGAGAACAATAAACATGGATAGC
TGACTTTCTAAAGTCAGATGTAACATTTACCTGCTCAAGGTATAGGACTTTTCTCTGAAAAATG
CTACTGCGTGGACTGCTAGGAATGGCAATCACCTCAACCCTTTCACCCCTTCCAAGATCTCTGA
AGTAATCCTTATATCTTGTGATATCAGCAGTCGCAGACATCAAAATCAACCTATGTCAAGAGAG
GAATGACACACGTCTTATCAATCAGCAGGAAGAAAGTAAGGCAGTCAGTTTTTAAGGTGGATTG
GAATCATCACTACTAAAAGATGGTTTAATGGAAAGCATTAAAGCAGGTCACTGCAGCAATTACC
TCAAGTCATTCTTTTTCATCATAAACTGCTTGACACAGGCGAGGACAAGGTCAGATTCCACTGA
CCTTTCATGTATTTCATCGAGAATAATAACCTTATAGTTCAATGCAGCAATGCCCTTGTCACGC
ATTTGCTCCAATACAACACCAGCTGTTTTGAAAACAATTCTTGACCTGATTCGTGCGTCGAACA
GGTTTGAAAGTTAGAAGTCAATCGACAAGTGGGTAAGGACATATGATACAAGTATGCAACTGAG
GTGGATAAGATACTAGAGAGAATGTGTAGCACTGTTTTATATGATATATCCAGATTTCAATCGC
ACTAGCAATGTGGATATAAATGGGCCTGCATGTTATGTCGTTCTATGACATGGACTGGCCAGCC
AGGATAAAGCAAATTTGCTTGAATGCCCTTCTCTATATACTAAAATTCTCACAAAAAAAAAGTT
ATATACTACAAGAACTTAATCTTTCAATATGCTCAATATCCTTTGCTACAAAAGGTATCATGCA
TAATAATTTTAATTGAGATCAGCAGAATTTGTAGAAGAAATCCAACTGCCTAATATCAGCAAAT
ACGGTGCCAATGAGGTCAATGTCTTGTCACTGTAGTTCAATTACAATTAGTGATATCATTTTCA
CTGTGCTTGTATAGATACAAATTACAATTAGTGGTAGTATTTTCACTGCGGTTGTATAGATACA
AATTAAATGTGTCTCAGCTCGTTCATTGCTTGTGTCCTTATTAAGGTTATTATGAAAGCTCACT
AATCATGGATCACAGAGGAATCACCTTTTTGAATTGAGATTGGACACATTCGAGTGTCCTATGT
GATATCCGACCTCTTCTCCTACCTGACAATTGCGAGATTCGGCAATCATTTGAGCAATGGCTAC
TACTGCAAACCTCCTTGGCTGCGTGCATAGAATGGGTTCCATGTTTTCTTCCAGGAGGAACTGT
GGAACCATAGAACTCTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.114523991
Functional Information
Coding potential Y
Potential coding position 8568482-8565162(+)
8565165-8568490(-)
8568562-8565163(-)
Potential amino acid sequence MATTANLLGCVHRMGSMFSSRRNCGTIELFP*(+)
MERVLWFHSSSWKKTWNPFYARSQGGLQ*(-)
MVPQFLLEENMEPILCTQPRRFAVVAIAQMIAESRNCQVGEEVGYHIGHSNVSNLNSKRSRIVF
KTAGVVLEQMRDKGIAALNYKVIILDEIHERSVESDLVLACVKQFMMKKNDLRLILMSATADIT
RYKDYFRDLGRGERVEVIAIPSSPRSSIFQRKVLYLEQIVDILKMDSESLSTKYCSGPNTAADA
GLKPDVYELIHRLLLHIHQNEPDIGKSILVFLPTYYALEQQWIRLLSASSMFKVHILHRSIDTD
EALQTMKVSKSCRKVILATNIAESSVTIPGVAYVIDSCRSLQVYWDPIRKTDSAELVWVSKSQA
EQRKGRTGRTCDGQIYRLVTGPFYNSLTDHEYPAILRLSLREQVLMICCAESRAMNDPHGKSSM
VPQFLLEENMEPILCTQPRRFAVVAIAQMIAESRNCQVGEEVGYHIGHSNVSNLNSKRSRIVFK
TAGVVLEQMRDKGIAALNYKVIILDEIHERSVESDLVLACVKQFMMKKNDLRLILMSATADITR
YKDYFRDLGRGERVEVIAIPSSPRSSIFQRKVLYLEQIVDILKMDSESLSTKYCSGPNTAADAG
LKPDVYELIHRLLLHIHQNEPDIGKSILVFLPTYYALEQQWIRLLSASSMFKVHILHRSIDTDE
ALQTMKVSKSCRKVILATNIAESSVTIPGVAYVIDSCRSLQVYWDPIRKTDSAELVWVSKSQAE
QRKGRTGRTCDGQIYRLVTGPFYNSLTDHEYPAILRLSLREQVLMICCAESRAMNDPHGKSSMV
PQFLLEENMEPILCTQPRRFAVVAIAQMIAESRNCQVGEEVGYHIGHSNVSNLNSKRSRIVFKT
AGVVLEQMRDKGIAALNYKVIILDEIHERSVESDLVLACVKQFMMKKNDLRLILMSATADITRY
KDYFRDLGRGERVEVIAIPSSPRSSIFQRKVLYLEQIVDILKMDSESLSTKYCSGPNTAADAGL
KPDVYELIHRLLLHIHQNEPDIGKSILVFLPTYYALEQQWIRLLSASSMFKVHILHRSIDTDEA
LQTMKVSKSCRKVILATNIAESSVTIPGVAYVIDSCRSLQVYWDPIRKTDSAELVWVSKSQAEQ
RKGRTGRTCDGQIYRLVTGPFYNSLTDHEYPAILRLSLREQVLMICCAESRAMNDPHGKSSMVP
QFLLEENMEPILCTQPRRFAVVAIAQMIAESRNCQVGEEVGYHIGHSNVSNLNSKRSRIVFKTA
GVVLEQMRDKGIAALNYKVIILDEIHERSVESDLVLACVKQFMMKKNDLRLILMSATADITRYK
DYFRDLGRGERVEVIAIPSSPRSSIFQRKVLYLEQIVDILKMDSESLSTKYCSGPNTAADAGLK
PDVYELIHRLLLHIHQNEPDIGKSILVFLPTYYALEQQWIRLLSASSMFKVHILHRSIDTDEAL
QTMKVSKSCRKVILATNIAESSVTIPGVAYVIDSCRSLQVYWDPIRKTDSAELVWVSKSQAEQR
KGRTGRTCDGQIYRLVTGPFYNSLTDHEYPAILRLSLREQVLMICCAESRAMNDPH(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017