Plant Circular RNA Database

Detail information of AT1G26208_circ_g.4

			
						 General Information
					
						CircRNA Name
						AT1G26208_circ_g.4
					
						ID in PlantcircBase
						ath_circ_004391
					
						Alias
						1:9067152-9069523
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 9067152-9069523  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT1G26208						
					
						Parent gene annotation
						
							other RNA
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT1G26208_circ_g.1 AT1G26208_circ_g.2 AT1G26208_circ_g.3 AT1G26208_circ_g.5 AT1G26208_circ_g.6 AT1G26208_circ_g.7 						
					
						Support reads
						1/1
					
						Tissues
						seedling;root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G26208.5:2
AT1G26208.2:4
AT1G26208.4:5
AT1G26208.6:2
AT1G26208.3:4
AT1G26208.1:5

General Information
CircRNA Name	AT1G26208_circ_g.4
ID in PlantcircBase	ath_circ_004391
Alias	1:9067152-9069523
Organism	Arabidpsis thaliana
Position	chr1: 9067152-9069523 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT1G26208
Parent gene annotation	other RNA
Parent gene strand	-
Alternative splicing	AT1G26208_circ_g.1 AT1G26208_circ_g.2 AT1G26208_circ_g.3 AT1G26208_circ_g.5 AT1G26208_circ_g.6 AT1G26208_circ_g.7
Support reads	1/1
Tissues	seedling;root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G26208.5:2 AT1G26208.2:4 AT1G26208.4:5 AT1G26208.6:2 AT1G26208.3:4 AT1G26208.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCAATTTCACCTTCACGAAGATTGAAGGACCAGACGAGTTCAGCGAGTAAAGGCGAAGAACCAG
CATTTCTGTCAACAATAGCATGTGCACGTTCCATTCcttccttcccttgatatatatctgcaat
gagctttgtctggtagtgcttcaattgagtgaaaacaatggtgctagggttgccatgtggtgaa
acttactc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTCCTTCCCTTGATATATATCTGCAATGAGCTTTGTCTGGTAGTGCTTCAATTGAGTGAAAAC
AATGGTGCTAGGGTTGCCATGTGGTGAAACTTACTCCTTCTCTTCAATTATATGAGGCTTCCTA
TAGGCTCCGGCTTTTCTTGATACTTCAAAAAACACAAAAAGAAATTTATATTTATTGATGATGG
AAGAAGAGCAAAGCAAATGAGAGACAGAGACACAGACCCTATATCAGAGAGTAAATTGGTGAAG
TGGATTGGATCACATAAGGTACGTAACTAGAAGAAGTAAGTGATCTTTTTGTGTCTGTGCATAT
AAGCTAATTTTGAGACCTTGGTTTTGTTTTCCTCTTTCTGTTGCGTGAAGCCATGGAGTCTCCG
AGAAACCATGGAGGCTCTGAAGAGGAGGAATACAGCAGTTGTGAGTCAGGGTGGACTATGTACA
TAGAAGACGCCTTCCATGGAAATGACCAATCATCTGTTGTTGTCGATGATGATGATGATGATAC
ACAGGTTAAAGAGGCTGATGATGGTTATGAGAACGATGATGGCGATACTAGTGATGATGGTGGT
GATGAAGAGAGTGATGATTCCATGGCTTCTGATGCATCCTCGGGGCCTAGCAATCAGCTTCCAA
AGCACATCAACAAACATGCAGCTAGGAAGAATGGTTCTAAACAAGTCTACCTTCAAAAACGCCA
ACACACAGAGAAAACAATCAGCAACGAAGGAGAAAAATCAGACCTCAAAGCTAGAACAAGAACA
AGTGCAGCTAGTCGTGTCCAGAGTAGAGGGAAGGTGAGCAAAACCAAATAAAACTCATGGCGAA
TGAGAGAAGAAGATATGGGGGTTCACAAAGAATCCAAATCCTGTAGTGAAGAGAGACGTTTCAG
GGGTCTCACCAATCGTGTTGTTTGCCTTTAATAAGCCATGTGTAGGTAGTTGCATTGTTTTCTT
TTGCCGGAATATGTTTTTTTGTAGAAGCTGTCCCAAATAAGTTATCTGCACGGTTCTCCGTTGG
AACCCTGTTATATAATATGTACCTTGTTCTTCAGAGACTTCCTTCTAACACAAAACAGAGCATA
TCCTGATCTGCATGTTCAACACAGGAGCCATCAAGATTCAAGAGAGTGATTCTTGGAAGAAAAA
CCAACAGTTCCTGAATCATTCTCAACAGCAACCAGATAATAACCAATCTTTAGCAATTGAAAAG
CAAAACATTAGTTATAAAATACTAATAATCTTTTTCCGAGAAAAAAGAAACGCTCATGGTAGAG
GACAAAGTGGTTGATGACAAAACAGGAGTTTCTAAGGTTGCCAATATGGTGTCTATGATGTGTG
GCCCAAGTAGCTAACAGCAGAGCTTTGCTTGCTAACAAAAAGTTGTGCTACTCTTAAGAGCTTC
ACATGATTCTTTTACAAAACAACAAATTGCAATCATTCAAAAATCTGTCATTTTCTATTACTAC
AAACTCTTTGTAACCACTTCTTAAGAAACTAGTTGCATATCAGGAAAGTGAGTTATTAGAAAAT
ATCAGAAATGAAACTGTTCTGATTTCTTTCCCACGTTGTCAACACAGTTGAACCATTTGCAACA
GTAGATACAAGTATTGCCCCACAGAGAAAATTATCTATCACTAGAACAATAATAACTGCATTTA
TAGTAGCTCAGGAAACAGTTTAGGAAACGGTACCATTTGTAACAGTAAATACAATCTTATTCAT
CAGAGGAAGTTAAGCAAACATGGCATGTTATATATAAGAATAATAATTGCATTTATAGAGTAGC
TCAAGAAAAAGTTTAGGAAACGGTGCAAGAAAATTATACTCTAATTAGAGAAATATCACATAGA
CAAAAATATAGAGACAGATCCTTACAAGCGCAATTGAACCGATAGCTTTATCAACCCTTTGATA
TAACAAGATCAGGTTTTGATCCTGGAAAACAAAAAAGATGGTGAATATATCAATTGAGGTTTAG
ATAATCATTGTAAATGCAACGTATTAAGCTTAATGAGGCACAATAAATGGGAGCAGAAAAGAAC
ATAGCTGGCAACTTTCCAGAAGAGGAAGACCCTCACGTTGATGTTATTCTCAGGTCGCTTTCGA
CTTTTGTAATCTCCAATCCATCATAATGCACGTAGGAGCAATAAACAGATAGACAGAAAACGAA
AGATGGGCCGTCCCAACCTAATTTTATGACCCACAAAACGTGAGATACATGAGAGAATGTTGCT
TGGTAAATGCATAAAACACTGAACTTGGTCTACCAATTTCACCTTCACGAAGATTGAAGGACCA
GACGAGTTCAGCGAGTAAAGGCGAAGAACCAGCATTTCTGTCAACAATAGCATGTGCACGTTCC
ATTC
						
					

			
		

Sequences
Splice junction sequence	CCAATTTCACCTTCACGAAGATTGAAGGACCAGACGAGTTCAGCGAGTAAAGGCGAAGAACCAG CATTTCTGTCAACAATAGCATGTGCACGTTCCATTCcttccttcccttgatatatatctgcaat gagctttgtctggtagtgcttcaattgagtgaaaacaatggtgctagggttgccatgtggtgaa acttactc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTCCTTCCCTTGATATATATCTGCAATGAGCTTTGTCTGGTAGTGCTTCAATTGAGTGAAAAC AATGGTGCTAGGGTTGCCATGTGGTGAAACTTACTCCTTCTCTTCAATTATATGAGGCTTCCTA TAGGCTCCGGCTTTTCTTGATACTTCAAAAAACACAAAAAGAAATTTATATTTATTGATGATGG AAGAAGAGCAAAGCAAATGAGAGACAGAGACACAGACCCTATATCAGAGAGTAAATTGGTGAAG TGGATTGGATCACATAAGGTACGTAACTAGAAGAAGTAAGTGATCTTTTTGTGTCTGTGCATAT AAGCTAATTTTGAGACCTTGGTTTTGTTTTCCTCTTTCTGTTGCGTGAAGCCATGGAGTCTCCG AGAAACCATGGAGGCTCTGAAGAGGAGGAATACAGCAGTTGTGAGTCAGGGTGGACTATGTACA TAGAAGACGCCTTCCATGGAAATGACCAATCATCTGTTGTTGTCGATGATGATGATGATGATAC ACAGGTTAAAGAGGCTGATGATGGTTATGAGAACGATGATGGCGATACTAGTGATGATGGTGGT GATGAAGAGAGTGATGATTCCATGGCTTCTGATGCATCCTCGGGGCCTAGCAATCAGCTTCCAA AGCACATCAACAAACATGCAGCTAGGAAGAATGGTTCTAAACAAGTCTACCTTCAAAAACGCCA ACACACAGAGAAAACAATCAGCAACGAAGGAGAAAAATCAGACCTCAAAGCTAGAACAAGAACA AGTGCAGCTAGTCGTGTCCAGAGTAGAGGGAAGGTGAGCAAAACCAAATAAAACTCATGGCGAA TGAGAGAAGAAGATATGGGGGTTCACAAAGAATCCAAATCCTGTAGTGAAGAGAGACGTTTCAG GGGTCTCACCAATCGTGTTGTTTGCCTTTAATAAGCCATGTGTAGGTAGTTGCATTGTTTTCTT TTGCCGGAATATGTTTTTTTGTAGAAGCTGTCCCAAATAAGTTATCTGCACGGTTCTCCGTTGG AACCCTGTTATATAATATGTACCTTGTTCTTCAGAGACTTCCTTCTAACACAAAACAGAGCATA TCCTGATCTGCATGTTCAACACAGGAGCCATCAAGATTCAAGAGAGTGATTCTTGGAAGAAAAA CCAACAGTTCCTGAATCATTCTCAACAGCAACCAGATAATAACCAATCTTTAGCAATTGAAAAG CAAAACATTAGTTATAAAATACTAATAATCTTTTTCCGAGAAAAAAGAAACGCTCATGGTAGAG GACAAAGTGGTTGATGACAAAACAGGAGTTTCTAAGGTTGCCAATATGGTGTCTATGATGTGTG GCCCAAGTAGCTAACAGCAGAGCTTTGCTTGCTAACAAAAAGTTGTGCTACTCTTAAGAGCTTC ACATGATTCTTTTACAAAACAACAAATTGCAATCATTCAAAAATCTGTCATTTTCTATTACTAC AAACTCTTTGTAACCACTTCTTAAGAAACTAGTTGCATATCAGGAAAGTGAGTTATTAGAAAAT ATCAGAAATGAAACTGTTCTGATTTCTTTCCCACGTTGTCAACACAGTTGAACCATTTGCAACA GTAGATACAAGTATTGCCCCACAGAGAAAATTATCTATCACTAGAACAATAATAACTGCATTTA TAGTAGCTCAGGAAACAGTTTAGGAAACGGTACCATTTGTAACAGTAAATACAATCTTATTCAT CAGAGGAAGTTAAGCAAACATGGCATGTTATATATAAGAATAATAATTGCATTTATAGAGTAGC TCAAGAAAAAGTTTAGGAAACGGTGCAAGAAAATTATACTCTAATTAGAGAAATATCACATAGA CAAAAATATAGAGACAGATCCTTACAAGCGCAATTGAACCGATAGCTTTATCAACCCTTTGATA TAACAAGATCAGGTTTTGATCCTGGAAAACAAAAAAGATGGTGAATATATCAATTGAGGTTTAG ATAATCATTGTAAATGCAACGTATTAAGCTTAATGAGGCACAATAAATGGGAGCAGAAAAGAAC ATAGCTGGCAACTTTCCAGAAGAGGAAGACCCTCACGTTGATGTTATTCTCAGGTCGCTTTCGA CTTTTGTAATCTCCAATCCATCATAATGCACGTAGGAGCAATAAACAGATAGACAGAAAACGAA AGATGGGCCGTCCCAACCTAATTTTATGACCCACAAAACGTGAGATACATGAGAGAATGTTGCT TGGTAAATGCATAAAACACTGAACTTGGTCTACCAATTTCACCTTCACGAAGATTGAAGGACCA GACGAGTTCAGCGAGTAAAGGCGAAGAACCAGCATTTCTGTCAACAATAGCATGTGCACGTTCC ATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.248333623

Conservation Information
Conserved circRNAs	NA
PMCS	0.248333623

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT1G26208_circ_g.4

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