Detail information of Solyc12g099320.1_circ_g.1


General Information
CircRNA Name Solyc12g099320.1_circ_g.1
ID in PlantcircBase sly_circ_003692
Alias SL3.0ch12:67488253|67493081
Organism Solanum lycopersicum
Position chr12: 66507277-66512105  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc12g099320.1
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered Solyc12g099320.1.1:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGGATGACAAAGATAAACCTTTAATATCAATGGAAGCGTAGAAAGCTCAATGGGGGGTAACT
CCTTCAAATCACTGTTGACACTATGAAATGTCTCGTcctgtgatcctgatgcatatgaatccaa
gagactgcgcagaatttcaagaaactggcagtgcatatcatcctcaaaatctgttagcatacct
ttgacctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGATCCTGATGCATATGAATCCAAGAGACTGCGCAGAATTTCAAGAAACTGGCAGTGCAT
ATCATCCTCAAAATCTGTTAGCATACCTTTGACCTGCAATTTGAAGCATGCTATTACTTACTTC
GAGTTCCTTCCATGGTGGCACTAAAATTAACAAATATGGTCTAAGCCACAAAAAGGACATGTCT
TTTGGCTAAATTACAAAAATATCCAGCACAAGGAAACAGGACACATCAAAAAAATGAGAAACGG
AGGAAAGACCAAATACTTCTCCAACACCATTTGATAGTAACAGAAAGCCAAGAAAAAAGATGTG
TACTAAAATTAACAAATATGGTCTAAGCCACAACAAGGACTTGTCTTTCTGCTACAATAACAAA
AACACTCATACGGAAACCGGAAATGTCCAAAAAGATGAGAAATGGAGGAGAGACCAACCACATA
TCCAATTATTTATACCATGAATCAAGCACCGCATTTATGGCATAGAATAACTGACCGTTCACAC
ATGACAGAAGATGCCTCAGAAAAACATGTTGGGGGAACAGGCATTAGATATCAAAATACATATA
TTGAAGCACATCATTGCAACAATAAATAAATATTACATGAATGAATGCATCTTAAGAGAAGGTA
ACCAACATCCAGAGTCACACTGATACACTGGATATTCCATTAGTCTCCACCATCAGGCAAAAGT
TGATGTTAAAACTCTAAGGAAAAGAAGAGAAGAAAAAACCAAAATTTTGCTCACCAGAAGCCCA
AACAGAGCAAGACCTTCCTGGCGAATTACATAAGACCGCAGCAGATTTGGATCTTGGTTCAAGA
AAAGAATGAGGATGTCTGTCCTGCATCAGTTAGAATCATTTTGGATGAGAATTTCAGGGAAGAA
AACACTACAATCATTTAAAAAGACAAAAGGAAAAGGAAAAGAGTCTACTTGCTAAAATATAACG
ATATGGTCCATTACCCCGTCAGGACTAGCTTCTTGTCTTGGCTCTCCAAAACATCAGCTATGAT
ATCGAATATGCCTTCGTTAACAAGATCCCTGCATCCATAATAGTATTTGCAGTTCTATCAGCTC
CATTTGCTATGAAAGCAACATAAGATATATTAGACTGATATTAATACAAAAGATGCAGCATGTG
ATGCATACCTAAATAGACGATGTTGCTGGACCACCTGCAAACTCTTACTCAAAGTACAAAACTC
GTGCAAAAAGTGCACCTGCCCAATCCAAGAAAAGGAAAAAAACAACAAGTAATGATGAGACTAC
AATACCCTTTCCCAGATCTCCCGATAAACATCAGATAAGGAACAAAAAAGTAAAAGGTGATAAT
ACTACTAGCTTTTCAAGAATAACTGACAAAGGAGTGCACTATAAAGGAATATCATTAGCGCAAG
AACATGCCAAATGTTAGGAACAGGTTTTTGGATTCATAGAGAAACAAAAGACAATAATTGTTAG
CACATCACAGAACAAACTCAACTACTAGAAAGTAGCATCAGTAGTAAATTTTGGAAGTAATGTT
AAACAGACGCAGGGATATATAATTTTACCAATTGCACTCCCACCTACGCTCAAGGTTTTCCTAC
ATTTCCATTAAACAAATTTTAAATCTGACAAGATGAGTAATAAGAGGGGAGAGGATCTTGACAC
AATCAGATCCCTAGAGGAAAGGGTGGAGCTCGAGTTTTTGTCAAAAAAAAAGGCTTAATAATAA
ATTTTACTTACAGTCGTCAAAATAATTTTCCACTAGTTGATTCTAGACCCCAAATCTAGCCTAC
ACAGAATTATTAATCCATAGGTTGAAGGAGATGATCCTGGATTCTAGTCTTCCTCCCCATCTTG
TATTAGAACTCATAACCATAATGCTGGTCAGGATCAGGATGCACAAAACCCACACACCGTTTGA
ATTTGAAAATATATGGTTTTTTGCATAATATTGGGGGGGGGGGGGGGGGGGGTTGGATAATCAA
TTACCCTCAAGTTTCTGCTTTGACCAATTCAAATTTAATGAGAAAACAGCAAGCAAAGAAAATA
TAAGAGAATGACCAACCAAAAAAAAGAAATAGATGAGTCCAGTGATTAAACGAATAAGCAATTA
TCAGAGCTGACAACATAACGAACAATTAAATGTCTAAAAAGAAAAAAAGAAGCAAACTAATAGC
TGCAATGCAACAGAGGCAACCCAAAATAAAGAGGAAACAACAATTTTCTTTACCAAATTTTTCT
TTGATTCTGCAGATGTAGAAGGCAACTTCAACTTTCCAAGCAAATCCTGAATGAAGGTGCTATC
ATCTTTTAAGAGAGATACAACCTATATCAAAAACCAAACAGTCAAGAACTATATTAACCAGAAG
AAACAACTTTTCAACTTCAGGAAGAAAATCTTACAATTGCATTGTTTGACTGGATTATGGAATT
AAGGTTTGCAACTATTGCATCATCCAACACTCTAGGCAAAATGGCATCCTGAAAGTAAGCCCAT
ATACTGTAAGTAAAATTGATAGTATAAGGATGTCATCTAAAAAGTAAAAGAACATAATCACCTT
CAGATAGCCAACTCGGTATGTTTGATGTATCTTCGATAGGACTATCGAATCTTTAATAGATATA
GCCTAACACACCCACAAATAAATAACAGATATCAACAAATGCAAACTGAACTAACATTGAAGAC
GTTTCAGCAAACATTCCTCAGAGGTACTATTACAGCAGGAAGAAAAGGAGTACAAAAGAAACAA
TGTACCTCCTTAAAGACCACATGCTCTTTGAGAAAATTGCGATGATGAACATGAGGAGCATCTG
GATCATCTGTTGACCAAAATATGAATCAGGTCGTCAGCACATTCCAAAATGAGATCAATGTCTT
CAGAGTAAGAGGTTGGAGTAAGACGTTGGCCATTCAGAATACAATAATTAAACAAAGAGTTCTA
TTGAAATTAAAAAAAGACATTTTAACTAAAAGTTGAAAGCAATAGGATCAAAACGTACATTCAA
GACACCCAATAATATCTATTATCAGCTCATCACCAAATATTTTTTCAAAGATCTGAGTGTTATT
GAGCATCACTGCAAGAAACCATTTCACGCTGATTAATTAAATCCCATAAAACAAGCCAAAGCAT
ACCCAAAAGAAAATGGTAGACAAGTAGGAAATACTAACTGATTCCTCTCACTATTTTGAAAACA
ATGTGAAGATTCTCGATGTTCTCCAGATCTTCGGAAATCCTAAATAAATCCATCAGCTTATGGA
AAAAATCTTGCTGCAGAACAAAAGAACCCAACTCAGTGCGATTCACCCATTGATCCGGAAAACA
AGAAGACAAATGATTAAACAAGTAATTCTTAACATGAACAGAAATCAATAAAAACGTGAAACAC
AAGCCTTATTTCGCCCTTTTTGGGATAGGAGTAGGGAGGGATCCTCTCCCTTTTTCTCGTCTTA
TAGATAGCGTTAGAAACTCCTCGAGAGTTCATCACTAACATGAATAAAATACTGCACTTTGAAT
AAGGATTTTGCACAAACAGTACAAAAGAATCTGTCATTTCCAGCTATTCTAAGACTTGTAAAAG
GAAGAAGGAGATATGCAGGGAGAAAGCAGTGACTGAAGCTCTTTAAGAGTTTCGCCAGTGACAG
AAAAATCTTTACATGACCAGAGCAAGTAGTGGACTCATGTTGAGCTAACAGCTTGCCCACATTG
TTTTCACTTTGACAAGAAAAGAGCCAAAGTGGCGAAAACCAGGAAGGGTGAAGAGGGGTGGGGG
AAGGGCAATGGCAGCACAGAGTACTAACCAACTTATCTATAACAGATAATCAAGTTCTCATCCA
GTTTTTGTTAATGTACTTGATAATTGCTTCAAAAAGGTGAAGTCTGGACATCTATGTTTTCAAG
TTGGGTAATGAATACGACAGCAATTAATTCTGAAGCTGACATGATAGAAGCAATTTCACAACCA
TCACTAATCTTCAATTTCATTGTTAGGAGGAAGACATTACTAATGCTAATTTGAGGTCAGGAAA
TCCCTCATTTCAATGACAATTAATTGTCCAAAAAGAAATCAAGCTTATAAAACTGCAAGATCCA
TGAAGCTCACATCGTTCAATATTAGTTCGGTAACACGCAACTGATCAGCAATGCCACCCTCTAC
AACCGTCTGCAAGTCAAACAATAAAAAACATTTTCAGAAATCAGTAAACAGTATGAAAAGATTT
GCACAACTCAGAAGTGTATTGCCTTCACAAACACAAGCAAACAGAGCTTTTGCTATATTATATA
CGCTATACCCTTTAATTTAACATGCTTTTTTTTTGCACCCAAGGGTGTCGGCTGGTGGTCAATG
AAGTGGTTGAGAACCCTAAGGTCTTAAATTCAAAACTCAGCAAAGACAAAAAAAAAACACTAGT
TGATTCTTCCCATTTGTCCTATCCTGGCCTTGGTGGCCAGAGTTACCTGGTAATTGTTGCTAGT
GGGATATATCCCATGGTATTAGTAAAGGTGCGCGAAAGCTGGCCCGGAAACCACGGTTATCAAA
AAAAAAATCAATGTTTTTTTGGTTGCTAACTTAGTATTGAGAAAGCAATCCCCACCCCCACCCC
TTTTTTTTACCCTCCCCCCAAATTACTAAGGCACACCCTCACGTGCAACTTAGAGATTTGGTAA
TTATCAAGGCAATATAAGACAAATACATTTCAACTATTTTAAGATAATATATGTTGAAAAGGAT
GACAAAGATAAACCTTTAATATCAATGGAAGCGTAGAAAGCTCAATGGGGGGTAACTCCTTCAA
ATCACTGTTGACACTATGAAATGTCTCGT
Conservation Information
Conserved circRNAs NA
PMCS 0.154193879
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress (acting as miRNA sponges)
Other Information
References Yang et al., 2020