Plant Circular RNA Database

Detail information of Os02g0603900_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os02g0603900_circ_g.7
					
						ID in PlantcircBase
						osa_circ_015382
					
						Alias
						Os_ciR4654
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 23655971-23657557  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os02g0603900						
					
						Parent gene annotation
						
							Hypothetical protein. (Os02t0603900-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0603900_circ_g.6 						
					
						Support reads
						4/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0603800-01:8
Os02t0603900-00:8
Os02t0603800-01:8

General Information
CircRNA Name	Os02g0603900_circ_g.7
ID in PlantcircBase	osa_circ_015382
Alias	Os_ciR4654
Organism	Oryza sativa
Position	chr2: 23655971-23657557 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os02g0603900
Parent gene annotation	Hypothetical protein. (Os02t0603900-00)
Parent gene strand	+
Alternative splicing	Os02g0603900_circ_g.6
Support reads	4/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0603800-01:8 Os02t0603900-00:8 Os02t0603800-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAACAAGAGTGTTCTTAATCTCAAAGCAGGCATCAGCTTCCTTTCTACCCTGGACTGTTATTCT
AACAAAATCAGCCCCTTTATCTGCTATCCTCATAACcttcaactgatccaaggaaactgacatc
aaaacagagccatcacggtgcaagacccctctgtagtctacttcctcaccctgtcataagtgca
actaataa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 144
Transcript exons: 23655971-23656041,23657485-23657557
CTTCAACTGATCCAAGGAAACTGACATCAAAACAGAGCCATCACGGTGCAAGACCCCTCTGTAG
TCTACTTAGGCATCAGCTTCCTTTCTACCCTGGACTGTTATTCTAACAAAATCAGCCCCTTTAT
CTGCTATCCTCATAAC
Transcript length: 906
Transcript exons: 23655971-23656048,23656131-23656205,23656351-23656467,23
656567-23656797,23656907-23657026,23657119-23657195,2365
7276-23657376,23657451-23657557
CTTCAACTGATCCAAGGAAACTGACATCAAAACAGAGCCATCACGGTGCAAGACCCCTCTGTAG
TCTACTTCCTCACCCTCCTTTTGTAAAGGCAACTGACCACTTCTACGCTGGAAATCAAAATAGC
GCCTGTGCTTTTCTTCAAAAGGAGCCACTCCTATTTGAAGGTCTGCGGCATGTGTGCCAAGATT
TGCCAATCTCCGGCAAGGATCAATCTCTTCTTCAGGTGGTTCCGTGAGGGAGACACGGATTGTA
TCGCCCAAGCCATCCATCAGAAGTGTTCCAATGCCAATGGCAGACTTCATCCTCCCATCTTCAC
CCTCTCCAGCTTCTGTAACTCCCAAGTGCAAAGGATAATCCCACCCTAGGTTATACATTTCTGC
TACAAGCAAGCGATATGCTTGGACCATGATAACAGGGTTACTTGCTTTCATTGAAAACACAAAG
TTATGGAAGTCCAGCTTCCGACAGATCCTGGCAAATTCCAAAGCAGACTCAACCATTCCGCGTG
GAGAATCACCATAGTAACTCATTATGCGGTCAGACAGACTTCCATGATTTGTTCCTATACGCAT
TGCTCTTCCATACTGCTTGCATTTCTCAACCAACGGGGAGAAGACCTTCTCGATATGCTCAAGC
TCTTTTTGATAATCATCTTCAGTATATTCAAGCTGCTCAAATTGGGCACGGCGATCAGCAAAAT
TCCCTGGGTTGACACGAATTTTGTCAAAGCATTCAGCCACTCTTAAAGCAACTGTCGGGGCAAA
ATGAATATCAGCCACTAGGGGGATGTTGTAATTCTTCTGAACAAGAGTGTTCTTAATCTCAAAG
CAGGCATCAGCTTCCTTTCTACCCTGGACTGTTATTCTAACAAAATCAGCCCCTTTATCTGCTA
TCCTCATAAC
						
					

						Genomic sequence
						
							CTTCAACTGATCCAAGGAAACTGACATCAAAACAGAGCCATCACGGTGCAAGACCCCTCTGTAG
TCTACTTCCTCACCCTGTCATAAGTGCAACTAATAAGAAATCTAGCACTATTGTTTTTATGATA
ACTATGGACTATAGGAGTTATTTTGAACTAACCTCCTTTTGTAAAGGCAACTGACCACTTCTAC
GCTGGAAATCAAAATAGCGCCTGTGCTTTTCTTCAAAAGGAGCCTGAGAACATATAATGTATAT
AAATAGAAATTCTTAAAAGAACAAATAGAACAAAACACTACTAAAAATAGTCAAAATTAATGTG
TGGCATTGGCAGCTAAACAAGAGAAAAGTGTAAAACTAGAGAAAGGTAATAAATCGTTACCACT
CCTATTTGAAGGTCTGCGGCATGTGTGCCAAGATTTGCCAATCTCCGGCAAGGATCAATCTCTT
CTTCAGGTGGTTCCGTGAGGGAGACACGGATTGTATCGCCCAAGCCATCCTGTAAGACAACAAA
AGGAAGACATAAGGCATGCTTACCCTTTGCAGATGGAAAGATATGATATATGCAATATAATACA
CAAAGTAAAAATGCAATTACCATCAGAAGTGTTCCAATGCCAATGGCAGACTTCATCCTCCCAT
CTTCACCCTCTCCAGCTTCTGTAACTCCCAAGTGCAAAGGATAATCCCACCCTAGGTTATACAT
TTCTGCTACAAGCAAGCGATATGCTTGGACCATGATAACAGGGTTACTTGCTTTCATTGAAAAC
ACAAAGTTATGGAAGTCCAGCTTCCGACAGATCCTGGCAAATTCCAAAGCAGACTCAACCTGAA
ATTATTTGTAGAACATGTCATTCATCTATCAAAACGATCATTAATTGAAGACATCCATGAAACG
AAAAGTTATTTGAATGAAATCCCCAGAAAGGAAATAATACCATTCCGCGTGGAGAATCACCATA
GTAACTCATTATGCGGTCAGACAGACTTCCATGATTTGTTCCTATACGCATTGCTCTTCCATAC
TGCTTGCATTTCTCAACCAACGGGGAGAAGACCTGAAATGATATGGAAGTGGCTATGCAAGTAA
GGAAACATACTGCACATTCTTACTGACTAAATTAACACTAAAGAGTGAGATATTTGGAACCTTC
TCGATATGCTCAAGCTCTTTTTGATAATCATCTTCAGTATATTCAAGCTGCTCAAATTGGGCAC
GGCGATCAGCTGCAAGTAGAGTTCTCAGCATATGCACAGAGTTGATAAGATATTGACACTAAAA
TGATACACATCATTATTTCACTCACCAAAATTCCCTGGGTTGACACGAATTTTGTCAAAGCATT
CAGCCACTCTTAAAGCAACTGTCGGGGCAAAATGAATATCAGCCACTAGGGGGATGTTGTAACT
GTTGAAATGCAAAAGCAAGATGAGAATTCATTCATGAAAACTCACTGAATCTGGAAAAATGATG
ACTCTTACTTCTTCTGAACAAGAGTGTTCTTAATCTCAAAGCAGGCATCAGCTTCCTTTCTACC
CTGGACTGTTATTCTAACAAAATCAGCCCCTTTATCTGCTATCCTCATAAC
						
					

			
		

Sequences
Splice junction sequence	GAACAAGAGTGTTCTTAATCTCAAAGCAGGCATCAGCTTCCTTTCTACCCTGGACTGTTATTCT AACAAAATCAGCCCCTTTATCTGCTATCCTCATAACcttcaactgatccaaggaaactgacatc aaaacagagccatcacggtgcaagacccctctgtagtctacttcctcaccctgtcataagtgca actaataa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 144 Transcript exons: 23655971-23656041,23657485-23657557 CTTCAACTGATCCAAGGAAACTGACATCAAAACAGAGCCATCACGGTGCAAGACCCCTCTGTAG TCTACTTAGGCATCAGCTTCCTTTCTACCCTGGACTGTTATTCTAACAAAATCAGCCCCTTTAT CTGCTATCCTCATAAC Transcript length: 906 Transcript exons: 23655971-23656048,23656131-23656205,23656351-23656467,23 656567-23656797,23656907-23657026,23657119-23657195,2365 7276-23657376,23657451-23657557 CTTCAACTGATCCAAGGAAACTGACATCAAAACAGAGCCATCACGGTGCAAGACCCCTCTGTAG TCTACTTCCTCACCCTCCTTTTGTAAAGGCAACTGACCACTTCTACGCTGGAAATCAAAATAGC GCCTGTGCTTTTCTTCAAAAGGAGCCACTCCTATTTGAAGGTCTGCGGCATGTGTGCCAAGATT TGCCAATCTCCGGCAAGGATCAATCTCTTCTTCAGGTGGTTCCGTGAGGGAGACACGGATTGTA TCGCCCAAGCCATCCATCAGAAGTGTTCCAATGCCAATGGCAGACTTCATCCTCCCATCTTCAC CCTCTCCAGCTTCTGTAACTCCCAAGTGCAAAGGATAATCCCACCCTAGGTTATACATTTCTGC TACAAGCAAGCGATATGCTTGGACCATGATAACAGGGTTACTTGCTTTCATTGAAAACACAAAG TTATGGAAGTCCAGCTTCCGACAGATCCTGGCAAATTCCAAAGCAGACTCAACCATTCCGCGTG GAGAATCACCATAGTAACTCATTATGCGGTCAGACAGACTTCCATGATTTGTTCCTATACGCAT TGCTCTTCCATACTGCTTGCATTTCTCAACCAACGGGGAGAAGACCTTCTCGATATGCTCAAGC TCTTTTTGATAATCATCTTCAGTATATTCAAGCTGCTCAAATTGGGCACGGCGATCAGCAAAAT TCCCTGGGTTGACACGAATTTTGTCAAAGCATTCAGCCACTCTTAAAGCAACTGTCGGGGCAAA ATGAATATCAGCCACTAGGGGGATGTTGTAATTCTTCTGAACAAGAGTGTTCTTAATCTCAAAG CAGGCATCAGCTTCCTTTCTACCCTGGACTGTTATTCTAACAAAATCAGCCCCTTTATCTGCTA TCCTCATAAC
Genomic sequence	CTTCAACTGATCCAAGGAAACTGACATCAAAACAGAGCCATCACGGTGCAAGACCCCTCTGTAG TCTACTTCCTCACCCTGTCATAAGTGCAACTAATAAGAAATCTAGCACTATTGTTTTTATGATA ACTATGGACTATAGGAGTTATTTTGAACTAACCTCCTTTTGTAAAGGCAACTGACCACTTCTAC GCTGGAAATCAAAATAGCGCCTGTGCTTTTCTTCAAAAGGAGCCTGAGAACATATAATGTATAT AAATAGAAATTCTTAAAAGAACAAATAGAACAAAACACTACTAAAAATAGTCAAAATTAATGTG TGGCATTGGCAGCTAAACAAGAGAAAAGTGTAAAACTAGAGAAAGGTAATAAATCGTTACCACT CCTATTTGAAGGTCTGCGGCATGTGTGCCAAGATTTGCCAATCTCCGGCAAGGATCAATCTCTT CTTCAGGTGGTTCCGTGAGGGAGACACGGATTGTATCGCCCAAGCCATCCTGTAAGACAACAAA AGGAAGACATAAGGCATGCTTACCCTTTGCAGATGGAAAGATATGATATATGCAATATAATACA CAAAGTAAAAATGCAATTACCATCAGAAGTGTTCCAATGCCAATGGCAGACTTCATCCTCCCAT CTTCACCCTCTCCAGCTTCTGTAACTCCCAAGTGCAAAGGATAATCCCACCCTAGGTTATACAT TTCTGCTACAAGCAAGCGATATGCTTGGACCATGATAACAGGGTTACTTGCTTTCATTGAAAAC ACAAAGTTATGGAAGTCCAGCTTCCGACAGATCCTGGCAAATTCCAAAGCAGACTCAACCTGAA ATTATTTGTAGAACATGTCATTCATCTATCAAAACGATCATTAATTGAAGACATCCATGAAACG AAAAGTTATTTGAATGAAATCCCCAGAAAGGAAATAATACCATTCCGCGTGGAGAATCACCATA GTAACTCATTATGCGGTCAGACAGACTTCCATGATTTGTTCCTATACGCATTGCTCTTCCATAC TGCTTGCATTTCTCAACCAACGGGGAGAAGACCTGAAATGATATGGAAGTGGCTATGCAAGTAA GGAAACATACTGCACATTCTTACTGACTAAATTAACACTAAAGAGTGAGATATTTGGAACCTTC TCGATATGCTCAAGCTCTTTTTGATAATCATCTTCAGTATATTCAAGCTGCTCAAATTGGGCAC GGCGATCAGCTGCAAGTAGAGTTCTCAGCATATGCACAGAGTTGATAAGATATTGACACTAAAA TGATACACATCATTATTTCACTCACCAAAATTCCCTGGGTTGACACGAATTTTGTCAAAGCATT CAGCCACTCTTAAAGCAACTGTCGGGGCAAAATGAATATCAGCCACTAGGGGGATGTTGTAACT GTTGAAATGCAAAAGCAAGATGAGAATTCATTCATGAAAACTCACTGAATCTGGAAAAATGATG ACTCTTACTTCTTCTGAACAAGAGTGTTCTTAATCTCAAAGCAGGCATCAGCTTCCTTTCTACC CTGGACTGTTATTCTAACAAAATCAGCCCCTTTATCTGCTATCCTCATAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.288174191

Conservation Information
Conserved circRNAs	NA
PMCS	0.288174191

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							23657556-23655973(-)
						
						Potential amino acid sequence
						
							MRIADKGADFVRITVQGRKEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRVAECFDKIRVN
PGNFADRRAQFEQLEYTEDDYQKELEHIEKVFSPLVEKCKQYGRAMRIGTNHGSLSDRIMSYYG
DSPRGMVESALEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVAEMYNLGWDYPLHLGVTEA
GEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEEEIDPCRRLANLGTHAADLQIGVAPFEEK
HRRYFDFQRRSGQLPLQKEGEEVDYRGVLHRDGSVLMSVSLDQLKVMRIADKGADFVRITVQGR
KEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFEQLEYTE
DDYQKELEHIEKVFSPLVEKCKQYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESALEFARICR
KLDFHNFVFSMKASNPVIMVQAYRLLVAEMYNLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLL
MDGLGDTIRVSLTEPPEEEIDPCRRLANLGTHAADLQIGVAPFEEKHRRYFDFQRRSGQLPLQK
EGEEVDYRGVLHRDGSVLMSVSLDQLKVMRIADKGADFVRITVQGRKEADACFEIKNTLVQKNY
NIPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEKVFSPLV
EKCKQYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESALEFARICRKLDFHNFVFSMKASNPVI
MVQAYRLLVAEMYNLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEE
EIDPCRRLANLGTHAADLQIGVAPFEEKHRRYFDFQRRSGQLPLQKEGEEVDYRGVLHRDGSVL
MSVSLDQLKVMRIADKGADFVRITVQGRKEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRV
AECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEKVFSPLVEKCKQYGRAMRIGTNHGS
LSDRIMSYYGDSPRGMVESALEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVAEMYNLGWD
YPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEEEIDPCRRLANLGTHAADL
QIGVAPFEEKHRRYFDFQRRSGQLPLQKEGEEVDYRGVLHRDGSVLMSVSLDQLK(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	23657556-23655973(-)
Potential amino acid sequence	MRIADKGADFVRITVQGRKEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRVAECFDKIRVN PGNFADRRAQFEQLEYTEDDYQKELEHIEKVFSPLVEKCKQYGRAMRIGTNHGSLSDRIMSYYG DSPRGMVESALEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVAEMYNLGWDYPLHLGVTEA GEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEEEIDPCRRLANLGTHAADLQIGVAPFEEK HRRYFDFQRRSGQLPLQKEGEEVDYRGVLHRDGSVLMSVSLDQLKVMRIADKGADFVRITVQGR KEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFEQLEYTE DDYQKELEHIEKVFSPLVEKCKQYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESALEFARICR KLDFHNFVFSMKASNPVIMVQAYRLLVAEMYNLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLL MDGLGDTIRVSLTEPPEEEIDPCRRLANLGTHAADLQIGVAPFEEKHRRYFDFQRRSGQLPLQK EGEEVDYRGVLHRDGSVLMSVSLDQLKVMRIADKGADFVRITVQGRKEADACFEIKNTLVQKNY NIPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEKVFSPLV EKCKQYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESALEFARICRKLDFHNFVFSMKASNPVI MVQAYRLLVAEMYNLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEE EIDPCRRLANLGTHAADLQIGVAPFEEKHRRYFDFQRRSGQLPLQKEGEEVDYRGVLHRDGSVL MSVSLDQLKVMRIADKGADFVRITVQGRKEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRV AECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEKVFSPLVEKCKQYGRAMRIGTNHGS LSDRIMSYYGDSPRGMVESALEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVAEMYNLGWD YPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEEEIDPCRRLANLGTHAADL QIGVAPFEEKHRRYFDFQRRSGQLPLQKEGEEVDYRGVLHRDGSVLMSVSLDQLK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0603900_circ_g.7

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