Detail information of Niben101Scf07678g06001_circ_g.1


General Information
CircRNA Name Niben101Scf07678g06001_circ_g.1
ID in PlantcircBase nbe_circ_007740
Alias NA
Organism Nicotiana benthamiana
Position chrNiben101Scf07678: 632614-637142  JBrowse»
Reference genome Niben.genome.v1.0.1
Type   e-circRNA
Identification method DCC
Parent gene Niben101Scf07678g06001
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   TC-CA
Number of exons covered Niben101Scf07678g06001.1:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATATGAATCAAACAGATTACAGAGCACTGAAGGAGCGTGCACAGGCATTGGCAGATCTGAA
GTTCACCTATGTTGTGTCTTGTCAAATCTATGGTGCttcagccacctcggcgaggttggttaat
tctttgaagcgatgaatggtttcttggactgaattattctggttcctcttgaaaaaaattgtca
cactgtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCAGCCACCTCGGCGAGGTTGGTTAATTCTTTGAAGCGATGAATGGTTTCTTGGACTGAATTA
TTCTGGTTCCTCTTGAAAAAAATTGTCACACTGTTAACTATATCTACTTTTTTGTTTTTCAGAT
AAGGACGCTAGGGATGTTACGGTCACGGTTTGAGTCAATTCCTTCAGCTTTTAGTGAACGTCTT
GTGCCATCATCAAAAGCTGAAAGAAAACATAGACATCCGGTAGCACTTACTTATATATGCAAAT
GATGCTCCCATATTCTTGCATCATCACACTCCTTTGTCCTTCTTTAACTATTTTTAGTTCTGCT
GAACTTTGTGTTACTGTGGTAGGATGATTCTTTGGAAAGGAAGAACATTGCAAAGTTCTCTCAG
ATGTGGAATGAGTTCATACTTTCCTTGCGGATGGAGGATCTCATCAACCATAAGTGGGGACTAT
GCCTGAAGTTTATTCCGCTCCAAACTTAGTGAATAGATTTTGGTAGTTATGCACTTTAAAATTA
AGTTGGTGATTCCTTTGTTGCTGTGAATTTCCAGGGAAAGAGATCTGCTTCTTGTACCCTATTC
ATCAAGTGAAGTCTCTGTTATTCAGTGGCCTCCTTTCTTGCTTGCTAGTAAGGTGATACTTGAT
TCCTGTTGTTTATTTTAGATCATTGCGAAAGTCCTTTTTTGGCTCAGTGTTTTCACCTGATTCT
TATTAGATTCCAATAGCACTGGATATGGCAAAAGATTTCAGGGGAAAAGAAGATGCTGACCTGT
TCCGGAAGATTAAAAGTGATGATTTTATGCGCTCTGCAGTGATTGAATGCTATGAGACACTCAG
ATATTTGCTGGTCGGCATTCTGGAAAACAAAGATGACAAGATGTAAGGCATTTTCAAGTACTAT
TTTCTTGTTTATTTTTCGGACTATCTAATGCTGAAGGTTCAGGTCCATACTTGTCATACAGTTT
TCCCGTAATTTGTCGCGAAGAAGCCATATGACCACTTTGAATTTGGTCTCTTTTATAGGGTTGT
GGAGCAGATACGCAAAGAAGTAGATGACAGCATAAAAGAAAGAAGGTTCTTAAGGAAATTTCGG
ATGAGTGGGTTGCCCTTACTGAATGATAAATTGGAGAGATTCTTGAATCTGCTGGTTAGTGCAA
TACATGTATTTGCACAGACACAACTAACTAGTTCTAAATGCTTCCTTCTGTATTTTTCTGCTTT
CTGAAGAAATTTTGGATGTTGAGTTGTCTGCTAGTACGTTCTGTGTGTTTAATATGGTTTTTAC
AGGTGACTGACTATGAAGATGAAGAGGCGAAAAGATCCCCTATGATTAACCTTATCCAAGATAT
CATGGAAATTATCATTCAAGATGTTATGGTTGATGGCCATGAGTAAGTTCTTGACAGAAAGTAG
TTTTCTCAGAGGACACGAGATTTAGGCAATCAAGTCTGCATTGTAACGAGCATCTTCAATTTTG
ATGTACAATTTGTATTNTTTCTCAGAGGACACGAGATTTAGGAAATCAAGTCTGCATTGTAACG
AGCATCTTCAATTTTGATGTACAATTTGTATTTTCTTTCTTTTTCCCCTAGAATTCTGGAGAGA
GCTCACCAGGTTGGCAGAAAGGAGCAGATATTTGAAAGGATAAATATCAATCTTACTCATAACA
GATCATGGAGGGAAAAGGTATTTTGAAATCTGAGCTTTGTTTCTTTGTTAATTCTTTAAATCAT
GCTCTTATTATCTTATTAATGCTTTTTATCTGGCTCTTCTGTACCACATCTGTTCTATAGGTTA
TCAGGCTTAATTTGTTGTTGACTGTGAAAGAGTCTGCAATTAATGTGCCAACTAATTTGGATGC
TCGCCGTCGAATGACCTTTTTCGCAAACTCCCTTTTTATGAAAATGCCAGATGCTCCAAAAGTT
CGTAATATGCTTTCTTTCAGGTTAGTTCTGAGTTAGAATTAAAGGACCTTTATTGCTTTGCTGG
TGAATTTTATGTCTTCTATTTTATTTTATGAAGCATTCCCCAGATGTTGTTCTTTATGCAGCAT
TGCTGAAGCTATATAGGATTGGCAATGGGGCGGGGCAGGTTGAGCTTACACTCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATTTTCCAACCCGCACCCACATCAGAGCTCCCCCGGCCCACCCCGCATAAGCTTCAA
ACCCACCCCAAACCACACCATTGCCATCTCTAAAGCTATATATCAGGAACTAAAGTTTTGTTGG
TCTGCCACACTGCTAAACTGGTAGTTTGACAAATGAATCTTGTGGTGACACAAGCAAACCTTTA
TAGAATTTGTTACTGATGGGCTGAATGCTGACTCTTTCAGCATCTTCCAACTTACAGTTTTAAG
TGAACAGTAAATTAGAAGATGCAACTTCTGCATTTGCGAGATACATTCTCTAAGTCGTTCAGAG
AGAGCCATTCTGGGTATTTCCCAATCAGAGCAATTTCTCCTAAAACTTGTACACCAGGATCATC
CATTCGAGCACTGTGGGGCATAGCTTCCTGCATTGTCGGTGAAACCGTAAAGATCATGATACCT
GATCTTTAATGGTGCGAGTCCTGTCCAGTCCTGTCCAAGCATCGTGCCAAAATCATATATTCCT
TCCGTTACCAATCTTGACCTTTTTATGCGATTCCAAAGCAGCCCATAAGATGCATATATGCTTC
CATAAGCCTAAACCATGAGAAATGTGTATGGGACCTGAATACATAAGCTTTAATCACCATCTTT
TCTAGTAATCACTCTTGTCCACTAGCTCCTTGCTTCTCTGCCATATCTCCACAACTATTTCATA
AGTAAGCTACTATTGTGCACTTTCAAGTGCCCAGTCCCAGCCCCCTATTTCTTTTATCCATCAA
CACCCTGTCCCACTTTACCAGGTGAAAAGTTCTTTTTTCTTTGCTTCCCTTCCACAAAAAGTTT
CCCTGATCTTATCCAACTTTGTCCACTATTATCTTTAATTGTAGAGGAAAGTGCTCACTCTTTC
ATTTTTCAACTCATTGTTCCAATTAAAAATGAAACTAAGAGTAAACTGTTTGTACAGATGATAT
TTTGAGTTTGTAGTACTTAAAACTATAGTTTGAAGTCTGAGTAGTTAGTTGAATTTGTGACATC
AAGTATGGCATGATATAGAGTACTGTATGATTATAATACATTGAACATTGGACAGAGAAATTAT
TTCTATAATGATAAAATGTGAGTTCCTTATGAATGACTAAAAAGAAGACCAGATCAAGTTTTGG
GGATAAAGGGAGTACACAATCCGTTATTAATAGGTTTGGAAAAGCAGTTATCAGCAGATGCTTG
TCCTCTGTTATGGACACACAGACACCGTACAGATATTTGACAGCTGTGGTACGAGGATTTGAGG
GGAAAAACGACAATAGAAAAGAAATTTTTGTAGAAAATATGGGGACTCACTTTCATATATTAAA
TGAATGAAAACAGGCACTTGAGAAATTTATTCTTTCGTTTGTTCACTTGATTTGTTCTGAAAAC
ACCAATTCTCTACTTACCATGCGTGTTACTTTTAACTTCTTCCTCTAAATATCTTATATTGCTT
GATATTTATGTTTCATACTATTTTCTCATGTTGGAACGATGTGTCTGCTTGCTGTGCTGCAAAT
GCAGAACTGATTTCAATATTTTTGTTTAATGTCCAGTGTCTTAACTCCTTACTATAATGAAGAT
GTTCTCTATTCTGATGAGGAACTTAACAAGGAAAATGAGGATGGTATTACCACTCTGTTTTACC
TTCAGAAGATATATCCAGGTGAGTGTGTAATCTGTGGCTTGTTAATTGCTGTATCGCATTGCAA
CACAGATAAAGCACTAAATTTAGTTGTTTTTATTTGGTCATGAAATAGATCAATGGAAAAATTT
TGAGGACCGCATCAATGATCCTAAGATGGGATGCTTAAATAAAGACAGGAATGAATTGATTCGT
CACTGGGTATCTTACAGAGGACAGACACTTGCAAGGACAGGTCAAATAGCAAACATATTTGATA
TTTCATGCAACTTCTGACAGTATATTTTGTTTCCACTCAACTATGCTCTCTTCTTCTATTGTGC
TTGTGAAATTCCAGTGAGAGGAATGATGTACTACAGGGAGGCTCTTGAGCTTCAGTACTTTCTA
GATTTTGCAGAGGACAAAGGTGCTACTTGAATGTTTTTGTTTCATTGTGTACTGATACATACGC
GAGACTGTGAGTTGGATGTGGTTAGTGCTAACTATCTACTCTTTTCTTTGCAGCAATTTTTGGA
GGTTATCGAATCATTGATATGAATCAAACAGATTACAGAGCACTGAAGGAGCGTGCACAGGCAT
TGGCAGATCTGAAGTTCACCTATGTTGTGTCTTGTCAAATCTATGGTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019