Plant Circular RNA Database

Detail information of Zm00001d034624_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d034624_circ_g.1
					
						ID in PlantcircBase
						zma_circ_006970
					
						Alias
						zma_circ_0000582
					
						Organism
						
							Zea mays						
					
						Position
						
							chr1: 298201256-298202750  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Zm00001d034624						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d034624_T017:3
Zm00001d034624_T035:3
Zm00001d034624_T003:3
Zm00001d034624_T002:3
Zm00001d034624_T024:3
Zm00001d034624_T015:3
Zm00001d034624_T030:3
Zm00001d034624_T029:3
Zm00001d034624_T006:3
Zm00001d034624_T011:3
Zm00001d034624_T012:3
Zm00001d034624_T005:3
Zm00001d034624_T013:3
Zm00001d034624_T041:3
Zm00001d034624_T038:3
Zm00001d034624_T028:3
Zm00001d034624_T039:3
Zm00001d034624_T025:3
Zm00001d034624_T022:3
Zm00001d034624_T032:3
Zm00001d034624_T020:3
Zm00001d034624_T014:3
Zm00001d034624_T004:3
Zm00001d034624_T019:3
Zm00001d034624_T009:3

General Information
CircRNA Name	Zm00001d034624_circ_g.1
ID in PlantcircBase	zma_circ_006970
Alias	zma_circ_0000582
Organism	Zea mays
Position	chr1: 298201256-298202750 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Zm00001d034624
Parent gene annotation	protein_coding
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d034624_T017:3 Zm00001d034624_T035:3 Zm00001d034624_T003:3 Zm00001d034624_T002:3 Zm00001d034624_T024:3 Zm00001d034624_T015:3 Zm00001d034624_T030:3 Zm00001d034624_T029:3 Zm00001d034624_T006:3 Zm00001d034624_T011:3 Zm00001d034624_T012:3 Zm00001d034624_T005:3 Zm00001d034624_T013:3 Zm00001d034624_T041:3 Zm00001d034624_T038:3 Zm00001d034624_T028:3 Zm00001d034624_T039:3 Zm00001d034624_T025:3 Zm00001d034624_T022:3 Zm00001d034624_T032:3 Zm00001d034624_T020:3 Zm00001d034624_T014:3 Zm00001d034624_T004:3 Zm00001d034624_T019:3 Zm00001d034624_T009:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATATCTCATAAAGAGAGATTGACAGTGACCCCACAAGGCTGCACGTTCTTGTGGGATATCCCA
AAGAAACTCCTTCCATTCAGCAACCATGGCTTCTGCctgtgatgggctaatcatatcgcagcta
tttgctactctcagtgactgaagtatccgaagagcctgtgtgtcaaagcatgacaaattgatct
ctccatta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 996
Transcript exons: 298201256-298202012,298202093-298202214,298202634-298202
750
CTGTGATGGGCTAATCATATCGCAGCTATTTGCTACTCTCAGTGACTGAAGTATCCGAAGAGCC
TGTGTGTCAAAGCATGACAAATTGATCTCTCCATTACTGCTGTTTTTGGCAATTCTTAAAGCAA
CATCAACAAGGACAAGTTCTTCAGGAATATATGATGGAGACAGCTTTTGTTGGAGTTGCTTAGC
AGCAGTTATTTGCCCAAATTCCAGTAAAGAGAGCACAGCCTTCTCCATATCTACAGGCCTAACA
TTTTGTTCCCAACCAGATAAAGATGCTTCCATCTTTACAAATTCCTCTTCAGAGAGCAAATTTC
TAGCTTGTTCACCAATCTTTGAACTATGTAAAGTGTTAGAATTGTTATCCAGCTCATTAGCTCT
ACTTTCAATATTGTCATTGACACCTCGTTTAAGTGGTGAATTTGTTTTCATCCTTCGCTTTGCT
CGCGTGTTATTTATTGTTGTTGAAGATGCTTCACTGTTAGACTCAAAGAGTTGCACATGTTGGT
ATGATAAACTGTCCCGTGTGCTATTCCTTTCTGTAATTTTCATGTGCGGCAAGCTCATGTTACT
GTCTATTTTTGTGATGATATCAGCAGTATGTTCTATAATACTGCTACTGTTTCCAACAGCTTTG
TTATGAGCAACAGCAGAAGTGGCAAATTCACCATCAACCTTGGATTGACTCTCTGACTCAACAG
CCAGGAGCCACACCCTAGTCTCAATTTCCCGCAAAAGATGAAGAGGATAGACCGGAGAGGATTT
AGTCATAGTTCCACTTAGCCATTGTAAAGAGAGCAATAATATTTCATGAAGCTCTTGTGCTGGT
ATCTCTTTTCCTACTGCTTCGGCATGCTTAAGGAAAAATAATCCAGCCTTTAAAGGAGGGAAAG
AATATCTCATAAAGAGAGATTGACAGTGACCCCACAAGGCTGCACGTTCTTGTGGGATATCCCA
AAGAAACTCCTTCCATTCAGCAACCATGGCTTCTGC
						
					

						Genomic sequence
						
							CTGTGATGGGCTAATCATATCGCAGCTATTTGCTACTCTCAGTGACTGAAGTATCCGAAGAGCC
TGTGTGTCAAAGCATGACAAATTGATCTCTCCATTACTGCTGTTTTTGGCAATTCTTAAAGCAA
CATCAACAAGGACAAGTTCTTCAGGAATATATGATGGAGACAGCTTTTGTTGGAGTTGCTTAGC
AGCAGTTATTTGCCCAAATTCCAGTAAAGAGAGCACAGCCTTCTCCATATCTACAGGCCTAACA
TTTTGTTCCCAACCAGATAAAGATGCTTCCATCTTTACAAATTCCTCTTCAGAGAGCAAATTTC
TAGCTTGTTCACCAATCTTTGAACTATGTAAAGTGTTAGAATTGTTATCCAGCTCATTAGCTCT
ACTTTCAATATTGTCATTGACACCTCGTTTAAGTGGTGAATTTGTTTTCATCCTTCGCTTTGCT
CGCGTGTTATTTATTGTTGTTGAAGATGCTTCACTGTTAGACTCAAAGAGTTGCACATGTTGGT
ATGATAAACTGTCCCGTGTGCTATTCCTTTCTGTAATTTTCATGTGCGGCAAGCTCATGTTACT
GTCTATTTTTGTGATGATATCAGCAGTATGTTCTATAATACTGCTACTGTTTCCAACAGCTTTG
TTATGAGCAACAGCAGAAGTGGCAAATTCACCATCAACCTTGGATTGACTCTCTGACTCAACAG
CCAGGAGCCACACCCTAGTCTCAATTTCCCGCAAAAGATGAAGAGGATAGACCCTGCAAAACGG
AAGTGCTAATCGGCAAGGAGAAGATAAGATTGAGCACAATGTGAACATAAATAAAAAGATTAAG
CTTACGGAGAGGATTTAGTCATAGTTCCACTTAGCCATTGTAAAGAGAGCAATAATATTTCATG
AAGCTCTTGTGCTGGTATCTCTTTTCCTACTGCTTCGGCATGCTTAAGGAAAAATAATCCAGCC
TGCATGTACAGAAAATGAATATAAAACTTAGTGATCTCCATTTCATAATACAAGGCGTTTAGGA
TTTGAGACAGTTTTTTTACTAGGCATACTACATTCTTCAAGCATGCATCTATGAGTGTTCCTAA
TGTGCTCTTATTAATTGGTTAGCTTTCAATAGAACTGAAAAGGTGCCTCCAATAAAGTGGTCAA
ACATAGAATGTAAGAAAGATGTTCTCAACAAATGCAGCAGCTAGATGGCATTGATCATTTCATG
GTTGTTTCTTAGGTAGAAAGCGGAACTCTATTCTCGTCTTTTCTCACTGCTACCTACTGAGTCT
TAATGCCTCCTTGATATATGTGCATAGAACTAGGACACCTTGCATTCAAATGGAGGGAGTACAG
CTTTTCTGTGCATTTTACTTATCGAAAAGAATACCTTTAAAGGAGGGAAAGAATATCTCATAAA
GAGAGATTGACAGTGACCCCACAAGGCTGCACGTTCTTGTGGGATATCCCAAAGAAACTCCTTC
CATTCAGCAACCATGGCTTCTGC
						
					

			
		

Sequences
Splice junction sequence	AATATCTCATAAAGAGAGATTGACAGTGACCCCACAAGGCTGCACGTTCTTGTGGGATATCCCA AAGAAACTCCTTCCATTCAGCAACCATGGCTTCTGCctgtgatgggctaatcatatcgcagcta tttgctactctcagtgactgaagtatccgaagagcctgtgtgtcaaagcatgacaaattgatct ctccatta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 996 Transcript exons: 298201256-298202012,298202093-298202214,298202634-298202 750 CTGTGATGGGCTAATCATATCGCAGCTATTTGCTACTCTCAGTGACTGAAGTATCCGAAGAGCC TGTGTGTCAAAGCATGACAAATTGATCTCTCCATTACTGCTGTTTTTGGCAATTCTTAAAGCAA CATCAACAAGGACAAGTTCTTCAGGAATATATGATGGAGACAGCTTTTGTTGGAGTTGCTTAGC AGCAGTTATTTGCCCAAATTCCAGTAAAGAGAGCACAGCCTTCTCCATATCTACAGGCCTAACA TTTTGTTCCCAACCAGATAAAGATGCTTCCATCTTTACAAATTCCTCTTCAGAGAGCAAATTTC TAGCTTGTTCACCAATCTTTGAACTATGTAAAGTGTTAGAATTGTTATCCAGCTCATTAGCTCT ACTTTCAATATTGTCATTGACACCTCGTTTAAGTGGTGAATTTGTTTTCATCCTTCGCTTTGCT CGCGTGTTATTTATTGTTGTTGAAGATGCTTCACTGTTAGACTCAAAGAGTTGCACATGTTGGT ATGATAAACTGTCCCGTGTGCTATTCCTTTCTGTAATTTTCATGTGCGGCAAGCTCATGTTACT GTCTATTTTTGTGATGATATCAGCAGTATGTTCTATAATACTGCTACTGTTTCCAACAGCTTTG TTATGAGCAACAGCAGAAGTGGCAAATTCACCATCAACCTTGGATTGACTCTCTGACTCAACAG CCAGGAGCCACACCCTAGTCTCAATTTCCCGCAAAAGATGAAGAGGATAGACCGGAGAGGATTT AGTCATAGTTCCACTTAGCCATTGTAAAGAGAGCAATAATATTTCATGAAGCTCTTGTGCTGGT ATCTCTTTTCCTACTGCTTCGGCATGCTTAAGGAAAAATAATCCAGCCTTTAAAGGAGGGAAAG AATATCTCATAAAGAGAGATTGACAGTGACCCCACAAGGCTGCACGTTCTTGTGGGATATCCCA AAGAAACTCCTTCCATTCAGCAACCATGGCTTCTGC
Genomic sequence	CTGTGATGGGCTAATCATATCGCAGCTATTTGCTACTCTCAGTGACTGAAGTATCCGAAGAGCC TGTGTGTCAAAGCATGACAAATTGATCTCTCCATTACTGCTGTTTTTGGCAATTCTTAAAGCAA CATCAACAAGGACAAGTTCTTCAGGAATATATGATGGAGACAGCTTTTGTTGGAGTTGCTTAGC AGCAGTTATTTGCCCAAATTCCAGTAAAGAGAGCACAGCCTTCTCCATATCTACAGGCCTAACA TTTTGTTCCCAACCAGATAAAGATGCTTCCATCTTTACAAATTCCTCTTCAGAGAGCAAATTTC TAGCTTGTTCACCAATCTTTGAACTATGTAAAGTGTTAGAATTGTTATCCAGCTCATTAGCTCT ACTTTCAATATTGTCATTGACACCTCGTTTAAGTGGTGAATTTGTTTTCATCCTTCGCTTTGCT CGCGTGTTATTTATTGTTGTTGAAGATGCTTCACTGTTAGACTCAAAGAGTTGCACATGTTGGT ATGATAAACTGTCCCGTGTGCTATTCCTTTCTGTAATTTTCATGTGCGGCAAGCTCATGTTACT GTCTATTTTTGTGATGATATCAGCAGTATGTTCTATAATACTGCTACTGTTTCCAACAGCTTTG TTATGAGCAACAGCAGAAGTGGCAAATTCACCATCAACCTTGGATTGACTCTCTGACTCAACAG CCAGGAGCCACACCCTAGTCTCAATTTCCCGCAAAAGATGAAGAGGATAGACCCTGCAAAACGG AAGTGCTAATCGGCAAGGAGAAGATAAGATTGAGCACAATGTGAACATAAATAAAAAGATTAAG CTTACGGAGAGGATTTAGTCATAGTTCCACTTAGCCATTGTAAAGAGAGCAATAATATTTCATG AAGCTCTTGTGCTGGTATCTCTTTTCCTACTGCTTCGGCATGCTTAAGGAAAAATAATCCAGCC TGCATGTACAGAAAATGAATATAAAACTTAGTGATCTCCATTTCATAATACAAGGCGTTTAGGA TTTGAGACAGTTTTTTTACTAGGCATACTACATTCTTCAAGCATGCATCTATGAGTGTTCCTAA TGTGCTCTTATTAATTGGTTAGCTTTCAATAGAACTGAAAAGGTGCCTCCAATAAAGTGGTCAA ACATAGAATGTAAGAAAGATGTTCTCAACAAATGCAGCAGCTAGATGGCATTGATCATTTCATG GTTGTTTCTTAGGTAGAAAGCGGAACTCTATTCTCGTCTTTTCTCACTGCTACCTACTGAGTCT TAATGCCTCCTTGATATATGTGCATAGAACTAGGACACCTTGCATTCAAATGGAGGGAGTACAG CTTTTCTGTGCATTTTACTTATCGAAAAGAATACCTTTAAAGGAGGGAAAGAATATCTCATAAA GAGAGATTGACAGTGACCCCACAAGGCTGCACGTTCTTGTGGGATATCCCAAAGAAACTCCTTC CATTCAGCAACCATGGCTTCTGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.157395763

Conservation Information
Conserved circRNAs	NA
PMCS	0.157395763

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							298202743-298201258(-)
						
						Potential amino acid sequence
						
							MVAEWKEFLWDIPQERAALWGHCQSLFMRYSFPPLKAGLFFLKHAEAVGKEIPAQELHEILLLS
LQWLSGTMTKSSPVYPLHLLREIETRVWLLAVESESQSKVDGEFATSAVAHNKAVGNSSSIIEH
TADIITKIDSNMSLPHMKITERNSTRDSLSYQHVQLFESNSEASSTTINNTRAKRRMKTNSPLK
RGVNDNIESRANELDNNSNTLHSSKIGEQARNLLSEEEFVKMEASLSGWEQNVRPVDMEKAVLS
LLEFGQITAAKQLQQKLSPSYIPEELVLVDVALRIAKNSSNGEINLSCFDTQALRILQSLRVAN
SCDMISPSQAEAMVAEWKEFLWDIPQERAALWGHCQSLFMRYSFPPLKAGLFFLKHAEAVGKEI
PAQELHEILLLSLQWLSGTMTKSSPVYPLHLLREIETRVWLLAVESESQSKVDGEFATSAVAHN
KAVGNSSSIIEHTADIITKIDSNMSLPHMKITERNSTRDSLSYQHVQLFESNSEASSTTINNTR
AKRRMKTNSPLKRGVNDNIESRANELDNNSNTLHSSKIGEQARNLLSEEEFVKMEASLSGWEQN
VRPVDMEKAVLSLLEFGQITAAKQLQQKLSPSYIPEELVLVDVALRIAKNSSNGEINLSCFDTQ
ALRILQSLRVANSCDMISPSQAEAMVAEWKEFLWDIPQERAALWGHCQSLFMRYSFPPLKAGLF
FLKHAEAVGKEIPAQELHEILLLSLQWLSGTMTKSSPVYPLHLLREIETRVWLLAVESESQSKV
DGEFATSAVAHNKAVGNSSSIIEHTADIITKIDSNMSLPHMKITERNSTRDSLSYQHVQLFESN
SEASSTTINNTRAKRRMKTNSPLKRGVNDNIESRANELDNNSNTLHSSKIGEQARNLLSEEEFV
KMEASLSGWEQNVRPVDMEKAVLSLLEFGQITAAKQLQQKLSPSYIPEELVLVDVALRIAKNSS
NGEINLSCFDTQALRILQSLRVANSCDMISPSQAEAMVAEWKEFLWDIPQERAALWGHCQSLFM
RYSFPPLKAGLFFLKHAEAVGKEIPAQELHEILLLSLQWLSGTMTKSSPVYPLHLLREIETRVW
LLAVESESQSKVDGEFATSAVAHNKAVGNSSSIIEHTADIITKIDSNMSLPHMKITERNSTRDS
LSYQHVQLFESNSEASSTTINNTRAKRRMKTNSPLKRGVNDNIESRANELDNNSNTLHSSKIGE
QARNLLSEEEFVKMEASLSGWEQNVRPVDMEKAVLSLLEFGQITAAKQLQQKLSPSYIPEELVL
VDVALRIAKNSSNGEINLSCFDTQALRILQSLRVANSCDMISPSQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	298202743-298201258(-)
Potential amino acid sequence	MVAEWKEFLWDIPQERAALWGHCQSLFMRYSFPPLKAGLFFLKHAEAVGKEIPAQELHEILLLS LQWLSGTMTKSSPVYPLHLLREIETRVWLLAVESESQSKVDGEFATSAVAHNKAVGNSSSIIEH TADIITKIDSNMSLPHMKITERNSTRDSLSYQHVQLFESNSEASSTTINNTRAKRRMKTNSPLK RGVNDNIESRANELDNNSNTLHSSKIGEQARNLLSEEEFVKMEASLSGWEQNVRPVDMEKAVLS LLEFGQITAAKQLQQKLSPSYIPEELVLVDVALRIAKNSSNGEINLSCFDTQALRILQSLRVAN SCDMISPSQAEAMVAEWKEFLWDIPQERAALWGHCQSLFMRYSFPPLKAGLFFLKHAEAVGKEI PAQELHEILLLSLQWLSGTMTKSSPVYPLHLLREIETRVWLLAVESESQSKVDGEFATSAVAHN KAVGNSSSIIEHTADIITKIDSNMSLPHMKITERNSTRDSLSYQHVQLFESNSEASSTTINNTR AKRRMKTNSPLKRGVNDNIESRANELDNNSNTLHSSKIGEQARNLLSEEEFVKMEASLSGWEQN VRPVDMEKAVLSLLEFGQITAAKQLQQKLSPSYIPEELVLVDVALRIAKNSSNGEINLSCFDTQ ALRILQSLRVANSCDMISPSQAEAMVAEWKEFLWDIPQERAALWGHCQSLFMRYSFPPLKAGLF FLKHAEAVGKEIPAQELHEILLLSLQWLSGTMTKSSPVYPLHLLREIETRVWLLAVESESQSKV DGEFATSAVAHNKAVGNSSSIIEHTADIITKIDSNMSLPHMKITERNSTRDSLSYQHVQLFESN SEASSTTINNTRAKRRMKTNSPLKRGVNDNIESRANELDNNSNTLHSSKIGEQARNLLSEEEFV KMEASLSGWEQNVRPVDMEKAVLSLLEFGQITAAKQLQQKLSPSYIPEELVLVDVALRIAKNSS NGEINLSCFDTQALRILQSLRVANSCDMISPSQAEAMVAEWKEFLWDIPQERAALWGHCQSLFM RYSFPPLKAGLFFLKHAEAVGKEIPAQELHEILLLSLQWLSGTMTKSSPVYPLHLLREIETRVW LLAVESESQSKVDGEFATSAVAHNKAVGNSSSIIEHTADIITKIDSNMSLPHMKITERNSTRDS LSYQHVQLFESNSEASSTTINNTRAKRRMKTNSPLKRGVNDNIESRANELDNNSNTLHSSKIGE QARNLLSEEEFVKMEASLSGWEQNVRPVDMEKAVLSLLEFGQITAAKQLQQKLSPSYIPEELVL VDVALRIAKNSSNGEINLSCFDTQALRILQSLRVANSCDMISPSQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021b

circRNA

Detail information of Zm00001d034624_circ_g.1

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