Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G24740_circ_g.6 |
ID in PlantcircBase | ath_circ_040278 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 8484814-8486528 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE |
Parent gene | AT5G24740 |
Parent gene annotation |
Protein of unknown function (DUF1162) |
Parent gene strand | - |
Alternative splicing | AT5G24740_circ_g.7 AT5G24740_circ_g.8 AT5G24740_circ_g.9 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G24740.6:4 AT5G24740.4:4 AT5G24740.1:3 AT5G24740.5:3 AT5G24740.2:4 AT5G24740.3:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.129642813 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8485391-8484816(-) |
Potential amino acid sequence |
MQEACSELTVNMGATGATRSEKEQSAPEKEPSDDPTLNKSRGWLNWLSRGMLGAGGTEDSSQFS GVVSDEVVKDIHKATKFYPLSSSPRNTSATGKICTCSIRLNVRKFSATLQHISGRIRRRYINFY KIKLDLLLREQSIDKSIRLGLEELEKKSDIDDILSYRSAAEGEMQEACSELTVNMGATGATRSE KEQSAPEKEPSDDPTLNKSRGWLNWLSRGMLGAGGTEDSSQFSGVVSDEVVKDIHKATKFYPLS SSPRNTSATGKICTCSIRLNVRKFSATLQHISGRIRRRYINFYKIKLDLLLREQSIDKSIRLGL EELEKKSDIDDILSYRSAAEGEMQEACSELTVNMGATGATRSEKEQSAPEKEPSDDPTLNKSRG WLNWLSRGMLGAGGTEDSSQFSGVVSDEVVKDIHKATKFYPLSSSPRNTSATGKICTCSIRLNV RKFSATLQHISGRIRRRYINFYKIKLDLLLREQSIDKSIRLGLEELEKKSDIDDILSYRSAAEG EMQEACSELTVNMGATGATRSEKEQSAPEKEPSDDPTLNKSRGWLNWLSRGMLGAGGTEDSSQF SGVVSDEVVKDIHKATKFYPLSSSPRNTSATGKICTCSIRLNVRKFSATLQHIS(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |