Detail information of AT4G21750_circ_g.4


General Information
CircRNA Name AT4G21750_circ_g.4
ID in PlantcircBase ath_circ_032062
Alias NA
Organism Arabidpsis thaliana
Position chr4: 11557292-11560256  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT4G21750
Parent gene annotation ATML1
Parent gene strand +
Alternative splicing AT4G21750_circ_g.1 AT4G21750_circ_g.2 AT4G21750_circ_g.3 AT4G21750_circ_g.5 AT4G21750_circ_g.6 AT4G21750_circ_g.7 AT4G21750_circ_g.8 AT4G21750_circ_g.9
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT4G21750.2:8
AT4G21750.3:8
AT4G21750.4:8
AT4G21750.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCTCGGTTCAGTTGCTACAGTCAATAGTCTGATCAAATGCACTGTCGAGCGGATTAAAGCCG
CTCTGGCCTGCGACGGAGCCTAATCGATGTTTTCGGgttcttcaaggaatgtcctcatccagac
gataagcaaagaaaggagctgagtcgcgagctaagcttagaacctcttcaagtcaagttttggt
tccaaaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2066
Transcript exons: 11557292-11557409,11557712-11558368,11558460-11558561,11
558672-11558872,11558969-11559143,11559272-11559543,1155
9626-11559721,11559812-11560256
GTTCTTCAAGGAATGTCCTCATCCAGACGATAAGCAAAGAAAGGAGCTGAGTCGCGAGCTAAGC
TTAGAACCTCTTCAAGTCAAGTTTTGGTTCCAAAACAAACGCACTCAAATGAAGGCACAACATG
AGAGGCACGAGAACCAGATACTGAAGTCAGAAAATGACAAGCTCCGAGCAGAGAACAATAGGTA
CAAGGATGCTCTAAGCAACGCAACATGCCCAAACTGTGGTGGTCCGGCAGCTATAGGAGAAATG
TCCTTCGACGAACAGCATTTAAGGATCGAAAATGCTCGTTTACGCGAAGAGATTGACAGAATCT
CTGCCATAGCTGCTAAATACGTAGGGAAGCCTTTAATGGCTAATTCCTCTTCTTTCCCTCAGCT
CTCTTCTTCACACCACATTCCCTCGCGCTCGCTTGATCTTGAAGTTGGGAACTTTGGGAACAAT
AACAATAGCCACACTGGTTTCGTTGGGGAAATGTTTGGAAGCAGCGACATTTTGAGGTCGGTTT
CGATACCTTCTGAGGCTGATAAGCCTATGATTGTTGAGTTAGCTGTTGCAGCAATGGAAGAGCT
TGTGAGAATGGCTCAAACTGGTGATCCCTTATGGGTTTCAAGCGATAATTCTGTTGAGATTCTC
AATGAAGAAGAGTATTTTAGGACGTTTCCTAGAGGAATTGGACCGAAACCTATCGGTTTGAGAT
CAGAAGCTTCAAGAGAGTCTACTGTTGTTATCATGAATCATATCAATCTCATTGAGATTCTAAT
GGATGTGAATCAATGGTCTAGTGTGTTCTGCGGGATTGTATCAAGAGCATTGACTCTAGAAGTT
CTCTCAACTGGCGTAGCAGGGAACTACAATGGGGCATTGCAAGTGATGACAGCAGAGTTCCAAG
TCCCATCGCCGCTTGTCCCTACTCGTGAGAACTACTTTGTAAGGTACTGTAAACAGCACAGTGA
CGGTATTTGGGCGGTTGTGGATGTCTCTTTGGACAGCCTAAGACCAAGTCCGATCACTAGAAGC
AGAAGAAGACCCTCTGGTTGTCTGATTCAAGAATTGCAGAATGGTTACTCCAAGGTGACATGGG
TAGAGCATATTGAGGTGGATGATAGATCGGTTCACAACATGTATAAACCGTTGGTTAATACCGG
TTTAGCTTTCGGTGCAAAACGTTGGGTGGCTACACTTGACCGCCAATGTGAGCGGCTCGCCAGT
TCCATGGCCAGCAACATTCCGGCTTGTGATCTTTCCGTGATAACGAGTCCTGAGGGGAGAAAGA
GCATGCTGAAACTAGCGGAGAGAATGGTGATGAGCTTCTGTACCGGAGTCGGCGCGTCAACTGC
GCATGCCTGGACTACATTGTCGACCACAGGATCCGACGACGTTCGGGTCATGACCCGAAAGAGC
ATGGATGATCCGGGAAGACCTCCAGGCATCGTTCTCAGCGCCGCTACTTCTTTCTGGATCCCTG
TAGCTCCAAAACGAGTGTTCGATTTTCTCAGAGATGAAAACTCAAGAAGCGAGTGGGATATACT
TTCCAATGGAGGCTTGGTTCAAGAAATGGCTCATATCGCAAATGGTCGTGATCCTGGGAATAGT
GTCTCCTTGCTTCGAGTCAATAGTGGGAACTCAGGGCAGAGCAACATGTTGATCTTACAAGAAA
GTTGTACGGACGCATCAGGGTCCTATGTGATATACGCACCAGTTGATATAATAGCTATGAACGT
TGTCCTGAGTGGTGGTGATCCGGATTATGTCGCTTTGTTACCATCCGGATTCGCTATTTTGCCG
GATGGCTCTGCTAGAGGAGGAGGAGGTAGTGCTAATGCCAGTGCTGGAGCCGGAGTTGAAGGAG
GAGGAGAGGGGAATAATCTTGAAGTGGTTACTACTACTGGGAGTTGTGGCGGTTCACTACTCAC
AGTTGCGTTTCAGATACTTGTTGACTCTGTTCCTACCGCTAAACTCTCTCTCGGTTCAGTTGCT
ACAGTCAATAGTCTGATCAAATGCACTGTCGAGCGGATTAAAGCCGCTCTGGCCTGCGACGGAG
CCTAATCGATGTTTTCGG

Genomic sequence GTTCTTCAAGGAATGTCCTCATCCAGACGATAAGCAAAGAAAGGAGCTGAGTCGCGAGCTAAGC
TTAGAACCTCTTCAAGTCAAGTTTTGGTTCCAAAACAAACGCACTCAAATGAAGGTATTTTTAC
TATATAGTATATATATACTTCGGCCAATTTTGATTATTAATTCTATTATTTTCATTTACCGGTC
TCGAATCTTCAAGAGAGTTATATATATATTTTTCAGAATAATCAAATGAATTTGATGTGTATTT
CCAACCACATTTTGATTTAGATACTACGAAGCCTTATTTAAACACATGTACTTAGCTAGTTCCA
AGATTAAGTTCATTTTGTCAAAAGATCTATCCATTTGTTTTGGTATATACTCTTGATGAGACCA
AACATAAGAAGATATATAACATTGGGACTTGTATAGGCACAACATGAGAGGCACGAGAACCAGA
TACTGAAGTCAGAAAATGACAAGCTCCGAGCAGAGAACAATAGGTACAAGGATGCTCTAAGCAA
CGCAACATGCCCAAACTGTGGTGGTCCGGCAGCTATAGGAGAAATGTCCTTCGACGAACAGCAT
TTAAGGATCGAAAATGCTCGTTTACGCGAAGAGATTGACAGAATCTCTGCCATAGCTGCTAAAT
ACGTAGGGAAGCCTTTAATGGCTAATTCCTCTTCTTTCCCTCAGCTCTCTTCTTCACACCACAT
TCCCTCGCGCTCGCTTGATCTTGAAGTTGGGAACTTTGGGAACAATAACAATAGCCACACTGGT
TTCGTTGGGGAAATGTTTGGAAGCAGCGACATTTTGAGGTCGGTTTCGATACCTTCTGAGGCTG
ATAAGCCTATGATTGTTGAGTTAGCTGTTGCAGCAATGGAAGAGCTTGTGAGAATGGCTCAAAC
TGGTGATCCCTTATGGGTTTCAAGCGATAATTCTGTTGAGATTCTCAATGAAGAAGAGTATTTT
AGGACGTTTCCTAGAGGAATTGGACCGAAACCTATCGGTTTGAGATCAGAAGCTTCAAGAGAGT
CTACTGTTGTTATCATGAATCATATCAATCTCATTGAGATTCTAATGGATGTGGTATAATTCTG
TTACTCTAACTCTGATTTTTAAAATTTTAACAAAGGTTCTAACTTATAGTTGACACTTTTGCTG
TTCTTTCTCTGTATAGAATCAATGGTCTAGTGTGTTCTGCGGGATTGTATCAAGAGCATTGACT
CTAGAAGTTCTCTCAACTGGCGTAGCAGGGAACTACAATGGGGCATTGCAAGTGGTATGACACT
CAAAGACCTTGATTTGGTTACTTGCTTTACAAGGTATTATTCTTAATCATGTAGTGAGATTTCT
CATGTGTTTGATCTTTGTTTTCTTGGTATGCAAAAGATGACAGCAGAGTTCCAAGTCCCATCGC
CGCTTGTCCCTACTCGTGAGAACTACTTTGTAAGGTACTGTAAACAGCACAGTGACGGTATTTG
GGCGGTTGTGGATGTCTCTTTGGACAGCCTAAGACCAAGTCCGATCACTAGAAGCAGAAGAAGA
CCCTCTGGTTGTCTGATTCAAGAATTGCAGAATGGTTACTCCAAGGTAAACTTAAGGTCTAAAT
TGATAATTTTAAAAGTATGAGGTTGAGAATTTGAAAAGAAGAGAAATGATTAGGTGATGGTTTT
GTTTTGTTTGAAGGTGACATGGGTAGAGCATATTGAGGTGGATGATAGATCGGTTCACAACATG
TATAAACCGTTGGTTAATACCGGTTTAGCTTTCGGTGCAAAACGTTGGGTGGCTACACTTGACC
GCCAATGTGAGCGGCTCGCCAGTTCCATGGCCAGCAACATTCCGGCTTGTGATCTTTCCGGTAT
GTACACCACACCATCAAATGAAAATATTTTTAGGGTCATTTTGATCAATTTGTTAATATTGGTA
TTAAATTGAAAAATATTAATTTACTAATTGAGTCCCTTAACTTTATGGTAATTATGAAAGTGAT
AACGAGTCCTGAGGGGAGAAAGAGCATGCTGAAACTAGCGGAGAGAATGGTGATGAGCTTCTGT
ACCGGAGTCGGCGCGTCAACTGCGCATGCCTGGACTACATTGTCGACCACAGGATCCGACGACG
TTCGGGTCATGACCCGAAAGAGCATGGATGATCCGGGAAGACCTCCAGGCATCGTTCTCAGCGC
CGCTACTTCTTTCTGGATCCCTGTAGCTCCAAAACGAGTGTTCGATTTTCTCAGAGATGAAAAC
TCAAGAAGCGAGGTAATTAATACTCAAGTCATAAAGAGGCCCTTTTTGAAAAAAAGATCGATAA
GTTACTTATTCTTGAGTTCAATTTTTGCAGTGGGATATACTTTCCAATGGAGGCTTGGTTCAAG
AAATGGCTCATATCGCAAATGGTCGTGATCCTGGGAATAGTGTCTCCTTGCTTCGAGTCAATGT
AAGTAATGTTCTTGAAATCTAGTAGTTTCTGTATAACCCCACTGTTGCTTGTGTTCAAAGTCTC
AACATTTTGTTTGTTTAAAAACAGAGTGGGAACTCAGGGCAGAGCAACATGTTGATCTTACAAG
AAAGTTGTACGGACGCATCAGGGTCCTATGTGATATACGCACCAGTTGATATAATAGCTATGAA
CGTTGTCCTGAGTGGTGGTGATCCGGATTATGTCGCTTTGTTACCATCCGGATTCGCTATTTTG
CCGGATGGCTCTGCTAGAGGAGGAGGAGGTAGTGCTAATGCCAGTGCTGGAGCCGGAGTTGAAG
GAGGAGGAGAGGGGAATAATCTTGAAGTGGTTACTACTACTGGGAGTTGTGGCGGTTCACTACT
CACAGTTGCGTTTCAGATACTTGTTGACTCTGTTCCTACCGCTAAACTCTCTCTCGGTTCAGTT
GCTACAGTCAATAGTCTGATCAAATGCACTGTCGAGCGGATTAAAGCCGCTCTGGCCTGCGACG
GAGCCTAATCGATGTTTTCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.20863389
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017