Detail information of Solyc01g103050.2_circ_g.2


General Information
CircRNA Name Solyc01g103050.2_circ_g.2
ID in PlantcircBase sly_circ_000429
Alias NA
Organism Solanum lycopersicum
Position chr1: 91734869-91737694  JBrowse»
Reference genome SL2.50.38
Type   ue-circRNA
Identification method CIRI
Parent gene Solyc01g103050.2
Parent gene annotation Auxin response factor 1
Parent gene strand +
Alternative splicing Solyc01g103050.2_circ_g.1 Solyc01g103050.2_circ_g.3 Solyc01g103050.2_circ_g.4
Support reads 3
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Solyc01g103050.2.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGCTACTTTGTCTGTTTTATAGGTTTAGTGGAACAATTGTTGGTGTTGGTGATAACCCGTCA
TCTAGATGGCCTGATTCTGAATGGAGATCTTTGAAGttggatctagttaattttgccgggaatt
cattgagaggtatactcttctgaagacgcagataatcacttaagagttggtgacttcaaattga
ttttctta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1107
Transcript exons: 91734869-91735013,91735490-91735608,91735783-91735878,91
735973-91736029,91736137-91736289,91736394-91736478,9173
6566-91736656,91736756-91736920,91737371-91737490,917376
19-91737694
TTGGATCTAGTTAATTTTGCCGGGAATTCATTGAGAGGTATACTCTTCTGAAGACGCAGATAAT
CACTTAAGAGTTGGTGACTTCAAATTGATTTTCTTATGGCACACGTTGCTGCAAATCATTTCGG
TGGTGGGACACATCCAGGGGCATCTGCAAATAATGCATTATACAAGGAACTTTGGCATGCCTGT
GCTGGACCTCTCGTAACAGTTCCCCGTGAAGGGGAAAGAGTTTATTATTTCCCTCAGGGTCACA
TGGAACAGCTTGAAGCGTCGACACACCAGGGAGTAGACCAACACCTTCCTTCCTTCAATTTGCC
AGCTAAAATTTTATGCAAAGTGATGAATGTTCAACTTCGTGCTGAGTCAGAGACAGATGAGGTG
TATGCACAGATAACTCTGCTTCCTGAACCAGATCAAGGCGAGATCACAAGCCCTGATCCCCCTC
TCCCTGAACCTGAAAAGTGCACTGTCCATTCGTTTTGCAAAACTCTTACTGCATCTGATACTAG
CACCCATGGTGGGTTTTCTGTTCTCCGAAGGCATGCAGATGAATGTTTGCCTCCACTGGATATG
TCACAGCAACCACCATGGCAGGAATTGGTCGCCAGTGATCTACATGGCAATGAATGGCACTTTC
GCCACATTTTTCGAGGTCAACCTAGGCGACACTTGCTAACAACTGGGTGGAGTGTTTTTGTCAG
TGCAAAGAAGTTGGTTGCTGGTGATGCTTTCATATTTCTCAGGGGAGACAGTGGGGAGCTTCGA
GTTGGTGTTAGGAGACTCATGAGACAGTTAAATAATATGCCATCTTCTGTGATTTCAAGTCACA
GCATGCATCTGGGTGTTCTTGCAACTGCATCTCATGCCATCATGACTGGGACCCTCTTCTCTGT
GTTCTATAAGCCTAGGACTAGTCAGTCAGAATTCATTGTCAGTGTGAACAAATATCTTGAAGCA
CGAAATCACAAGCTCTCTGTTGGGATGAGGTTTAAAATGAGATTTGAGGGTGAGGAAGTTCCAG
AAAGAAGGTTTAGTGGAACAATTGTTGGTGTTGGTGATAACCCGTCATCTAGATGGCCTGATTC
TGAATGGAGATCTTTGAAG

Genomic sequence TTGGATCTAGTTAATTTTGCCGGGAATTCATTGAGAGGTATACTCTTCTGAAGACGCAGATAAT
CACTTAAGAGTTGGTGACTTCAAATTGATTTTCTTATGGCACACGTTGCTGCAAATCATTTCGG
TGGTGGGACACATCCAGGTTTGAGTAATTTCTTCTTTCAATTCCATACTTTTATGTTTATAGTC
TATAATAAACTAGTAGTTCATGCTTAATTATAGATATTATGTTCATGTAGTATGATGTACCTGT
AGGCTGTAAATGCTCTCTTTTTCCTATTATTTGCTTTTGATTTGAGCTTTTACAATGTTGGTTC
TCCTTATTCCTATTTATCTTACTCATCTACCATGAACCAATTATATGCAAGTTCTGTTGAATTA
GTCCTCACTCCGGCTTTCTTTCAAGTTCTTCATTTGGTTATTTTACTTAGTCATGTATTTATAA
TATGCACATAACACTGTCCTATGTGTGTCTCCCTTAATACATTGACATCCATTGCTCTTGTATA
TCATTTGTATGGTAGTAGCCAATTCTCGTGCGTCTGCTCTGCCTAGCCCGATAATTGTCATTGT
GTTACTCGTTAAAGTGAAAAATATAATTGTTTGATCTTTCTGTAGGGGCATCTGCAAATAATGC
ATTATACAAGGAACTTTGGCATGCCTGTGCTGGACCTCTCGTAACAGTTCCCCGTGAAGGGGAA
AGAGTTTATTATTTCCCTCAGGGTCACATGGAACAGGTATCTTTTAATTTACATTTTTCTTCCC
TCCTCTTTTATCTTTTCAGGTCTTATGTGCACTTCTTAATCATCTCGTGTAAACGTGGAAGATA
TATAAAACCTCAATCATAGTGTGATGTGTCATACTCTCTTTCTCTCTCATTATGATTCGTAATG
ATTGCGATCTCTTTCCAGCTTGAAGCGTCGACACACCAGGGAGTAGACCAACACCTTCCTTCCT
TCAATTTGCCAGCTAAAATTTTATGCAAAGTGATGAATGTTCAACTTCGTGTAAGTGCCATATT
TTTTATAAAAAAATAATATTATTTTTAATTCCCCCTTCATGTGGTTGAATTATGGTTATAACTA
CCATTTTTAATTTTAGGCTGAGTCAGAGACAGATGAGGTGTATGCACAGATAACTCTGCTTCCT
GAACCAGATGTGAGTGCCACCTTTTAAATCTTTGAGGTTTTGATCATATGACACTTCCAAGACA
TACATTTTTTCAATAACATCCTGCATTTTCCTTTTGTCTTCTATGGTTTTAGCAAGGCGAGATC
ACAAGCCCTGATCCCCCTCTCCCTGAACCTGAAAAGTGCACTGTCCATTCGTTTTGCAAAACTC
TTACTGCATCTGATACTAGCACCCATGGTGGGTTTTCTGTTCTCCGAAGGCATGCAGATGAATG
TTTGCCTCCACTGGTAAGCTTGTATTTCAGAATTATGCCTTGTCTTGGCTTCACCCTTCTGAAC
TCCTCTACCCCTATCCATTAATTCATCTCATTAATTTTTGCTACATATTTCAGGATATGTCACA
GCAACCACCATGGCAGGAATTGGTCGCCAGTGATCTACATGGCAATGAATGGCACTTTCGCCAC
ATTTTTCGAGGTTATTTATGTAATTTTTTTCCGTGGTTTTGTCATTACGTATAATCTTCTGTTT
AGTTCTCAAAATAAATTTTGACTTCACGATCAGGTCAACCTAGGCGACACTTGCTAACAACTGG
GTGGAGTGTTTTTGTCAGTGCAAAGAAGTTGGTTGCTGGTGATGCTTTCATATTTCTCAGGCAA
GTTTATGAGTAACATATCCAGCCATATTTTACTGGAAGTGTATATTTATAAAAATTCTCTTTCA
TAACCCTTCCATCATTTCTTTATCTCTGCAGGGGAGACAGTGGGGAGCTTCGAGTTGGTGTTAG
GAGACTCATGAGACAGTTAAATAATATGCCATCTTCTGTGATTTCAAGTCACAGCATGCATCTG
GGTGTTCTTGCAACTGCATCTCATGCCATCATGACTGGGACCCTCTTCTCTGTGTTCTATAAGC
CTAGGTAGTTACTTTTTCCCTTTCCAACATGGGAATTTATCTCCACTTTATAGGATGAAGCTTC
CTATCTTTGTATGTCAATATTGTTGGGTTCTGTTCTAACAATGGTAATGATACTCTGATTTCAT
TGAGAGTTGGCAACAACAAAAATTACGTGTAGTAATTAATCGTACAGTGAGCACTAAGTTTCTC
TAGTTCTATACAAGCTCTGTGGTATAGGAAATTTGAATTTTTTGTTTTGCAGCTTCCTTACTAT
TAGCTAGCACTACTAGTGATTAATTTTTAAGATTTTAAGGGACTGTAGTAACATTATCCAGTTT
TTCTGTTTCTGTGTGCATGTTCTGATACTTTGTTCTTATTGTCTTGCCAATCTTTTGAATATTT
TCTTGCTTCTGAATCTAGATTCTTACACTTGCCATGTGGATTTAACTGTACTAAAACTGCTGAT
TTCCAGGACTAGTCAGTCAGAATTCATTGTCAGTGTGAACAAATATCTTGAAGCACGAAATCAC
AAGCTCTCTGTTGGGATGAGGTTTAAAATGAGATTTGAGGGTGAGGAAGTTCCAGAAAGAAGGT
AAATCTTCAGAATATAATAACTTTCAGGTCTTAGAGATCTGTATTACATTCAGCTCAAATTATT
TAAAAGAGGACTATAAAGGGCTAAAACTCAATTAACCCTTGGCTACTTTGTCTGTTTTATAGGT
TTAGTGGAACAATTGTTGGTGTTGGTGATAACCCGTCATCTAGATGGCCTGATTCTGAATGGAG
ATCTTTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.502793914
Functional Information
Coding potential Y
Potential coding position 91734969-91734916(+)
Potential amino acid sequence MAHVAANHFGGGTHPGASANNALYKELWHACAGPLVTVPREGERVYYFPQGHMEQLEASTHQGV
DQHLPSFNLPAKILCKVMNVQLRAESETDEVYAQITLLPEPDQGEITSPDPPLPEPEKCTVHSF
CKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVASDLHGNEWHFRHIFRGQPRRHL
LTTGWSVFVSAKKLVAGDAFIFLRGDSGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASH
AIMTGTLFSVFYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVG
DNPSSRWPDSEWRSLKLDLVNFAGNSLRGILF*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016