Detail information of Os09g0504700_circ_g.7


General Information
CircRNA Name Os09g0504700_circ_g.7
ID in PlantcircBase osa_circ_039731
Alias Os_ciR11875
Organism Oryza sativa
Position chr9: 19505272-19506128  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os09g0504700
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os09
t0504700-01);Zinc finger, RING/FYVE/PHD-type domain containing p
rotein. (Os09t0504700-02);Zinc finger, RING/FYVE/PHD-type domain
containing protein. (Os09t0504700-03)
Parent gene strand -
Alternative splicing Os09g0504700_circ_g.3 Os09g0504700_circ_g.4 Os09g0504700_circ_g.5 Os09g0504700_circ_g.6
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os09t0504700-02:3
Os09t0504700-01:3
Os09t0504700-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACCATCTTGTGATTGCCTCCTTGGGGCACGCCGAGTGCCGCTGACAGTACTCATGCTAACTTT
GGAGCTGAATCAGTGGCACTCAACTCTGAAATCAACcttcaagctggacccttctcccctttct
ggagagaggcagtgtataacaggtgcaaccctttgacgtttgttccctgtgtattatcatcaca
aaacacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCAAGCTGGACCCTTCTCCCCTTTCTGGAGAGAGGCAGTGTATAACAGGTGCAACCCTTTGA
CGTTTGTTCCCTGTGTATTATCATCACAAAACACACTTGACTTAATACATGATTATTGTTGTGA
CATAGGACAGATTATTAAGTTATGACTTAGGACAGATTGATGAATGGCAAACATAGGAATAGAT
AGCATATTCCCATGTTTCCCGTGATTACTAATTTATGAATTAGGACAGATTAATGCAATCTTTG
TATAAATGAACTAACCTTCCCGGCTAGCATCTACTTCCAGATCAACTACTGCCACAGGCTGCCT
CCTAGTTCTCCGGTTCCTTCTCTGCAAAATGCAAGACAGTTCAACAAATGTGGGCAAGGGATGC
ATCATTTTTTTCATGGAGACAAAGTCACCAGTTCGTTCTTAACAGGAACATCTAGTGTGCCTGA
GAAACATAGGGAGTAGTACATAAACCCTGGTAAAAGACTTAAACATCATTATGAACCCAATCAT
ATAACAATAACTACAGATAATAGTACAGAATATAATCAAGACTGAACTAATACTTTCAGTTCAA
GATAACAAAAAGTGACATACCGGAGGAGGCACTTGCGAAGCGGACAATGTCTGCACTTCATCAT
CCAGAGCTTCCACATCAATGGGGGAGGCGCGCGCACCAGTGGAGGTCGGCACCGCGCGACGGCT
TCCAACCACTGGGGAGGAGATCGCGTCCAGGTTCACAACGACTTTATCACCAGGACCATCTTGT
GATTGCCTCCTTGGGGCACGCCGAGTGCCGCTGACAGTACTCATGCTAACTTTGGAGCTGAATC
AGTGGCACTCAACTCTGAAATCAAC
Conservation Information
Conserved circRNAs osi_circ_018624
PMCS 0.119710832
Functional Information
Coding potential Y
Potential coding position 19505930-19505332(+)
19506085-19506104(-)
Potential amino acid sequence MGEARAPVEVGTARRLPTTGEEIASRFTTTLSPGPSCDCLLGARRVPLTVLMLTLELNQWHSTL
KSTFKLDPSPLSGERQCITGATL*(+)
MSTVSGTRRAPRRQSQDGPGDKVVVNLDAISSPVVGSRRAVPTSTGARASPIDVEALDDEVQTL
SASQVPPPRRNRRTRRQPVAVVDLEVDASREGNKRQRVAPVIHCLSPERGEGSSLKVDFRVECH
*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015