Detail information of BGIOSGA002581_circ_ig.1


General Information
CircRNA Name BGIOSGA002581_circ_ig.1
ID in PlantcircBase osi_circ_008904
Alias Chr01:86370_87418(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 102910-103958  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGAAAACCTGTGCAGGTTTTTCATAGGCGGTCGCTGTTGGAGTATATCTGAGGGGAGGTTTT
TCAGTTAAGTCTAAGAGCTGCCTGCCTGTAGAAGAGggatatgaagaacatggagaacttgagt
gctgatcgaagtgttcatctgatctataaaaatgtactcattaactcttcagatggagattttt
tctgtgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATATGAAGAACATGGAGAACTTGAGTGCTGATCGAAGTGTTCATCTGATCTATAAAAATGTA
CTCATTAACTCTTCAGATGGAGATTTTTTCTGTGGAGTAAACTTCTAGATGTAACGCTGGAGCT
TGTGAGGTGATTTAGTACTGTGAGGTCAAACCAACCATATATTTGTCGTTGCAGGCTTGTGGTT
CCATGAAGAGTTGGAGCTCATTCTGGGGTGTCAATTGAAGATACAAGGGAGGTCACACTTTTCC
GTACTCAAGTAAAGTCCATTATACAAGGCTATATAAACCACTTCTCTTGTAGGCTGTGATACAT
TTCAATTGGCATGCTTTGGCTAGTGCAATGATCCAAAGATGTTTCTACATGTAAACATCCTTTG
ATTAAGTTGACATGCTCCCTGTATTTGTTATGCGTATGATTTGCATTATGTCTGCATCAGTAAT
GGTTGAAAAGATCTATAGCTTAATACGTATTTAAATCTTAGAACACGTAACCAGTCCATTTTAC
TTTGTATTTTGATTAATGCAGAGACTTGCCCTGTGGTTCTTGTTTACTATCTTCCCTGCTGCTT
AATTCTGATCAGTCCATCTAAAATTAATGTGTATTTCTAAACAAAGATAGTATATGTGTGTGTA
ATTGAGTATATATCCTGGTATTCATTGTTTTTCTTTCCCTTCTGTTTTCTTTTTGTTCCTTTTT
TCCTTTTTTTTTTCTGAGAAACAGGGTCCATCCGAGAGGCCAATGTAAGTGACTGGTGAGGAAA
TTGTTGATAAAGTCCGAGCAACCTTTTACCCTTGATAGTTCCAGAGATAAGAAGCATATCTTTG
AAAAGTAGCATTCCTTGTGTCTTTCTTTTGTGACTTTGAATTTGTGTTGGTTTAGTTACTAAGC
ACTGCCTCTGCAAAGAGATATTGGTGCTTTACTTGCTGTGATTGGTGGTGTCATTGGAAAACCT
GTGCAGGTTTTTCATAGGCGGTCGCTGTTGGAGTATATCTGAGGGGAGGTTTTTCAGTTAAGTC
TAAGAGCTGCCTGCCTGTAGAAGAG
Conservation Information
Conserved circRNAs osa_circ_000022
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021