Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038804_circ_g.2 |
ID in PlantcircBase | zma_circ_009159 |
Alias | zma_circ_0002412 |
Organism | Zea mays |
Position | chr6: 164794995-164796327 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d038804 |
Parent gene annotation |
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase s ubunit STT3A |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d038804_T003:5 Zm00001d038804_T010:5 Zm00001d038804_T007:5 Zm00001d038804_T011:5 Zm00001d038804_T009:5 Zm00001d038804_T005:4 Zm00001d038804_T004:5 Zm00001d038804_T002:5 Zm00001d038804_T008:5 Zm00001d038804_T001:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.159996068 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
164795041-164796324(+) 164795047-164795886(-) |
Potential amino acid sequence |
MHVLLCIVTGRYSSRLYIAYAPLVVLGTLLAALVPVVGFNAVMTSEHFASFLVSIYPLLDFSPF RSTISLPALANVLLLEAGLPNLETHDIPSFYNICPTTLDTVFIILHVVALVYYIKGLLTPRLFK VAMTLVISVGLAVCFAVVAILVALVASSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTW PSYFMDINVLAFLIPAGIIVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTLL AALVPVVGFNAVMTSEHFASFLVSIYPLLDFSPFRSTISLPALANVLLLEAGLPNLETHDIPSF YNICPTTLDTVFIILHVVALVYYIKGLLTPRLFKVAMTLVISVGLAVCFAVVAILVALVASSPT KGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLIPAGIIVCSWGGYTFII NLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTLLAALVPVVGFNAVMTSEHFASFLVSIYPLLD FSPFRSTISLPALANVLLLEAGLPNLETHDIPSFYNICPTTLDTVFIILHVVALVYYIKGLLTP RLFKVAMTLVISVGLAVCFAVVAILVALVASSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQ PPTWPSYFMDINVLAFLIPAGIIVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVL GTLLAALVPVVGFNAVMTSEHFASFLVSIYPLLDFSPFRSTISLPALANVLLLEAGLPNLETHD IPSFYNICPTTLDTVFIILHVVALVYYIKGLLTPRLFKVAMTLVISVGLAVCFAVVAILVALVA SSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLIPAGII(+) MHWDKIDNECVASPRADNNPSRNQEGQHINVHKIRGPGRRLVFTDTSNDGDVLACISWVK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |