Detail information of AT2G22240_circ_g.1


General Information
CircRNA Name AT2G22240_circ_g.1
ID in PlantcircBase ath_circ_014351
Alias NA
Organism Arabidpsis thaliana
Position chr2: 9452166-9452630  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G22240
Parent gene annotation Inositol-3-phosphate synthase isozyme 2
Parent gene strand -
Alternative splicing AT2G22240_circ_g.2 AT2G22240_circ_g.3
Support reads 2
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G22240.1:2
AT2G22240.3:2
AT2G22240.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTGCTCTTTGAAATCTCCTTAGAGCGGAAAGTCTGTGGCGCTGAGAGGTTCATCCCGTCGTT
GTTTCCCAAATGATTATAGCTCACAATCGAAGTAGGctctccttcagctttaaattggattctg
gtgctgagttcagcgagaaggacaagatccaagataattggtgcagccaagagagagtcctcac
aagtgtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTCCTTCAGCTTTAAATTGGATTCTGGTGCTGAGTTCAGCGAGAAGGACAAGATCCAAGATA
ATTGGTGCAGCCAAGAGAGAGTCCTCACAAGTGTTATGCAACACTATAGTGTTCCTCCCTCCCA
TGAATATCTCAGACGTGTACTCATCCATTGCTCTTTTACTATCCGCAACATATGGCACATACTG
CAAAACATTCAGAACAATAGCAGGATTTAAGACTTTAAAATGTACTTAAAAAGAAAGGAGGAAT
TGATCACTCTGGCCTCTGATTCAAAATCAAACCTTGATGACAACGACATGGTCAGGGTGTTCAC
CAGGCTCAAAGAGGATGCCATTACTAGCTACCATGTCGTCTACAACATTGCTCTTTGAAATCTC
CTTAGAGCGGAAAGTCTGTGGCGCTGAGAGGTTCATCCCGTCGTTGTTTCCCAAATGATTATAG
CTCACAATCGAAGTAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.376617078
Functional Information
Coding potential Y
Potential coding position 9452586-9452168(-)
Potential amino acid sequence MNLSAPQTFRSKEISKSNVVDDMVASNGILFEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIF
MGGRNTIVLHNTCEDSLLAAPIILDLVLLAELSTRIQFKAEGEPTSIVSYNHLGNNDGMNLSAP
QTFRSKEISKSNVVDDMVASNGILFEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGRNT
IVLHNTCEDSLLAAPIILDLVLLAELSTRIQFKAEGEPTSIVSYNHLGNNDGMNLSAPQTFRSK
EISKSNVVDDMVASNGILFEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGRNTIVLHNT
CEDSLLAAPIILDLVLLAELSTRIQFKAEGEPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSN
VVDDMVASNGILFEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGRNTIVLHNTCEDSLL
AAPIILDLVLLAELSTRIQFKAEGE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017