Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT2G22240_circ_g.1 |
ID in PlantcircBase | ath_circ_014351 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 9452166-9452630 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT2G22240 |
Parent gene annotation |
Inositol-3-phosphate synthase isozyme 2 |
Parent gene strand | - |
Alternative splicing | AT2G22240_circ_g.2 AT2G22240_circ_g.3 |
Support reads | 2 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G22240.1:2 AT2G22240.3:2 AT2G22240.2:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.376617078 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
9452586-9452168(-) |
Potential amino acid sequence |
MNLSAPQTFRSKEISKSNVVDDMVASNGILFEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIF MGGRNTIVLHNTCEDSLLAAPIILDLVLLAELSTRIQFKAEGEPTSIVSYNHLGNNDGMNLSAP QTFRSKEISKSNVVDDMVASNGILFEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGRNT IVLHNTCEDSLLAAPIILDLVLLAELSTRIQFKAEGEPTSIVSYNHLGNNDGMNLSAPQTFRSK EISKSNVVDDMVASNGILFEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGRNTIVLHNT CEDSLLAAPIILDLVLLAELSTRIQFKAEGEPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSN VVDDMVASNGILFEPGEHPDHVVVIKYVPYVADSKRAMDEYTSEIFMGGRNTIVLHNTCEDSLL AAPIILDLVLLAELSTRIQFKAEGE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Pan et al., 2017 |