Detail information of BGIOSGA016638_circ_g.1


General Information
CircRNA Name BGIOSGA016638_circ_g.1
ID in PlantcircBase osi_circ_005568
Alias 4:22749307|22749503
Organism Oryza sativa ssp. indica
Position chr4: 22749307-22749503  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA016638
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGGCGTATCAGACATGAAATAGTCGTAATTGTTGTATTTAAGTATCAAGTGTCTCACATTTT
TGTGTTGCACAGTATAATATGCTTTGTTGTGCAGattgcttgcaaataatgagtgtagtaaaat
tattaattaaagtaagcttggtcttccttgatatttctggaagatttaagacaatagttggtat
ctgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGCTTGCAAATAATGAGTGTAGTAAAATTATTAATTAAAGTAAGCTTGGTCTTCCTTGATAT
TTCTGGAAGATTTAAGACAATAGTTGGTATCTGTTATGGGCGTATCAGACATGAAATAGTCGTA
ATTGTTGTATTTAAGTATCAAGTGTCTCACATTTTTGTGTTGCACAGTATAATATGCTTTGTTG
TGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021